IslandPathversion 1.0

IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2354	 53.18	0	2662886..2663938	-	350	74312972	yfeG	SSON_2526	-	transcriptional regulator EutR
2355	 57.99	+1	2663984..2664490	-	168	74312973	-	SSON_2527	-	hypothetical protein
2356	 55.45	0	2664497..2665156	-	219	74312974	-	SSON_2528	-	ethanolamine utilization protein eutL
2357	 56.98	+1	2665166..2666053	-	295	74312975	eutC	SSON_2529	-	ethanolamine ammonia-lyase small subunit
2358	 59.12	+1	2667447..2668850	-	467	74312976	-	SSON_2531	-	reactivating factor for ethanolamine ammonia lyase
2359	 55.01	0	2668847..2670073	-	408	74312977	eutH	SSON_2532	-	EutH
2360	 58.85	+1	2670390..2671604	-	404	74312978	eutG	SSON_2533	-	hypothetical protein
2361	 58.54	+1	2671567..2672403	-	278	74312979	eutJ	SSON_2534	-	EutJ
2362	 57.62	+1	2672414..2673817	-	467	74312980	eutE	SSON_2535	-	EutE
2363	 53.12	0	2673829..2674116	-	95	74312981	cchB	SSON_2536	-	detox protein
2364	 57.82	+1	2674223..2674516	-	97	161986484	cchA	SSON_2537	-	detox protein
2365	 58.01	+1	2674555..2675571	-	338	74312983	eutD	SSON_2538	-	phosphotransacetylase
2366	 58.83	+1	2675568..2676371	-	267	74312984	-	SSON_2539	-	hypothetical protein
2367	 55.56	0	2676368..2677069	-	233	74312985	-	SSON_2540	-	hypothetical protein
2368	 49.79	0	2677044..2677523	-	159	74312986	-	SSON_2541	-	hypothetical protein
2369	 48.53	0	2677536..2677943	-	135