IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2350	 52.41	0	2660033..2660488	-	151	74312968	yfeZ	SSON_2522	-	hypothetical protein
2351	 51.41	0	2660469..2660894	-	141	161986485	-	SSON_2523	-	putative acetyltransferase
2352	 50.46	0	2661108..2661977	+	289	74312970	amiA	SSON_2524	-	N-acetylmuramoyl-l-alanine amidase I
2353	 54.78	0	2661981..2662880	+	299	74312971	hemF	SSON_2525	-	coproporphyrinogen III oxidase
2354	 53.18	0	2662886..2663938	-	350	74312972	yfeG	SSON_2526	-	transcriptional regulator EutR
2355	 57.99	+1	2663984..2664490	-	168	74312973	-	SSON_2527	-	hypothetical protein
2356	 55.45	0	2664497..2665156	-	219	74312974	-	SSON_2528	-	ethanolamine utilization protein eutL
2357	 56.98	+1	2665166..2666053	-	295	74312975	eutC	SSON_2529	-	ethanolamine ammonia-lyase small subunit
2358	 59.12	+1	2667447..2668850	-	467	74312976	-	SSON_2531	-	reactivating factor for ethanolamine ammonia lyase
2359	 55.01	0	2668847..2670073	-	408	74312977	eutH	SSON_2532	-	EutH
2360	 58.85	+1	2670390..2671604	-	404	74312978	eutG	SSON_2533	-	hypothetical protein
2361	 58.54	+1	2671567..2672403	-	278	74312979	eutJ	SSON_2534	-	EutJ
2362	 57.62	+1	2672414..2673817	-	467	74312980	eutE	SSON_2535	-	EutE
2363	 53.12	0	2673829..2674116	-	95	74312981	cchB	SSON_2536	-	detox protein
2364	 57.82	+1	2674223..2674516	-	97	161986484	cchA	SSON_2537	-	detox protein
2365	 58.01	+1	2674555..2675571	-	338