IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2344	 55.43	0	2652770..2653561	-	263	161986487	ucpA	SSON_2515	-	short chain dehydrogenase
2345	 51.40	0	2653690..2654547	-	285	74312963	yfeT	SSON_2516	-	hypothetical protein
2346	 53.73	0	2654711..2655607	+	298	74312964	murQ	SSON_2517	-	N-acetylmuramic acid-6-phosphate etherase
2347	 51.80	0	2657040..2658344	+	434	161986486	-	SSON_2519	-	hypothetical protein
2348	 55.56	0	2658402..2659328	-	308	74312966	-	SSON_2520	-	hypothetical protein
2349	 50.69	0	2659397..2659972	-	191	74312967	-	SSON_2521	-	hypothetical protein
2350	 52.41	0	2660033..2660488	-	151	74312968	yfeZ	SSON_2522	-	hypothetical protein
2351	 51.41	0	2660469..2660894	-	141	161986485	-	SSON_2523	-	putative acetyltransferase
2352	 50.46	0	2661108..2661977	+	289	74312970	amiA	SSON_2524	-	N-acetylmuramoyl-l-alanine amidase I
2353	 54.78	0	2661981..2662880	+	299	74312971	hemF	SSON_2525	-	coproporphyrinogen III oxidase
2354	 53.18	0	2662886..2663938	-	350	74312972	yfeG	SSON_2526	-	transcriptional regulator EutR
2355	 57.99	+1	2663984..2664490	-	168	74312973	-	SSON_2527	-	hypothetical protein
2356	 55.45	0	2664497..2665156	-	219	74312974	-	SSON_2528	-	ethanolamine utilization protein eutL
2357	 56.98	+1	2665166..2666053	-	295	74312975	eutC	SSON_2529	-	ethanolamine ammonia-lyase small subunit
2358	 59.12	+1	2667447..2668850	-	467	74312976	-	SSON_2531	-	reactivating factor for ethanolamine ammonia lyase
2359	 55.01	0	2668847..2670073	-	408