IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2332	 50.10	0	2641002..2641973	+	323	74312950	cysK	SSON_2503	-	cysteine synthase A
2333	 50.78	0	2642357..2642614	+	85	74312951	ptsH	SSON_2504	-	phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr)
2334	 49.65	0	2642659..2644386	+	575	74312952	ptsI	SSON_2505	-	phosphoenolpyruvate-protein phosphotransferase
2335	 47.06	-1	2644427..2644936	+	169	74312953	crr	SSON_2506	-	glucose-specific PTS system component
2336	 53.90	0	2645037..2646383	+	448	74312954	-	SSON_2507	-	IS4 orf
2337	 51.88	0	2646416..2647267	-	283	74312955	pdxK	SSON_2508	-	pyridoxal kinase
2338	 46.88	-1	2647372..2647740	+	122	74312956	yfeK	SSON_2509	-	hypothetical protein
2339	 55.59	0	2647743..2648654	-	303	74312957	cysM	SSON_2510	-	cysteine synthase B
2340	 58.93	+1	2648788..2649885	-	365	74312958	cysA	SSON_2511	-	sulfate/thiosulfate transporter subunit
2341	 56.05	+1	2649875..2650750	-	291	74312959	cysW	SSON_2512	-	sulfate/thiosulfate transporter permease subunit
2342	 55.16	0	2650750..2651583	-	277	74312960	cysU	SSON_2513	-	sulfate/thiosulfate transporter subunit
2343	 53.29	0	2651583..2652599	-	338	74312961	cysP	SSON_2514	-	thiosulfate transporter subunit
2344	 55.43	0	2652770..2653561	-	263	161986487	ucpA	SSON_2515	-	short chain dehydrogenase
2345	 51.40	0	2653690..2654547	-	285	74312963	yfeT	SSON_2516	-	hypothetical protein
2346	 53.73	0	2654711..2655607	+	298	74312964	murQ	SSON_2517	-	N-acetylmuramic acid-6-phosphate etherase