IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2308	 48.15	0	2608207..2608449	-	80	74312925	yfdY	SSON_2468	-	hypothetical protein
2309	 51.47	0	2608802..2609722	+	306	161986488	ddg	SSON_2469	-	lipid A biosynthesis palmitoleoyl acyltransferase
2310	 55.37	0	2610214..2611452	-	412	74312927	-	SSON_2470	-	aminotransferase
2311	 54.37	0	2612648..2613151	+	167	74312928	-	SSON_2472	-	IS1 ORF
2312	 47.48	0	2614318..2615052	+	244	74312929	-	SSON_2473	-	putative 2-component transcriptional regulator
2313	 53.26	0	2615065..2615922	+	285	74312930	-	SSON_2474	-	putative ARAC-type regulatory protein
2314	 56.84	+1	2618445..2619482	-	345	74312931	-	SSON_2476	-	exoaminopeptidase
2315	 54.17	0	2620582..2621829	-	415	74312932	-	SSON_2478	-	putative transport protein
2316	 50.15	0	2621851..2622177	-	108	74312933	-	SSON_2479	-	putative PTS system enzyme IIB component
2317	 50.62	0	2622397..2623362	-	321	74312934	glk	SSON_2480	-	glucokinase
2318	 53.70	0	2623566..2624822	+	418	74312935	-	SSON_2481	-	hypothetical protein
2319	 52.29	0	2624937..2625263	+	108	74312936	-	SSON_2482	-	hypothetical protein
2320	 53.27	0	2625404..2626642	-	412	74312938	-	SSON_2484	-	manganese transport protein MntH
2321	 49.63	0	2626978..2628180	+	400	74312939	nupC	SSON_2485	-	permease of transport system for 3 nucleosides
2322	 50.28	0	2631038..2631397	+	119	74312940	yfeC	SSON_2489	-	hypothetical protein
2323	 46.31	-1	2631399..2631791	+	130