IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2283	 52.34	0	2576182..2576544	-	120	74312900	rus	SSON_2443	-	endodeoxyribonuclease RUS
2284	 51.89	0	2576541..2576831	-	96	74312901	ybcO	SSON_2444	-	hypothetical protein
2285	 48.54	0	2576824..2576994	-	56	74312902	ninE	SSON_2445	-	prophage protein NinE
2286	 57.68	+1	2576994..2577449	-	151	74312903	ybcN	SSON_2446	-	hypothetical protein
2287	 52.89	0	2578955..2580115	+	386	74312904	-	SSON_2447	-	IS21 ORF1
2288	 52.63	0	2580128..2580925	+	265	74312905	-	SSON_2448	-	IS21 ORF2
2289	 54.17	0	2581007..2581510	+	167	74312906	-	SSON_2449	-	IS1 ORF
2290	 43.59	-1	2581659..2582906	+	415	74312907	lacY	SSON_2450	-	galactoside permease
2291	 54.37	0	2585110..2585613	-	167	74312908	-	SSON_2451	-	IS1 ORF
2292	 54.52	0	2586162..2587001	-	279	74312909	-	SSON_2452	-	IS911 ORF2
2293	 53.82	0	2587876..2589222	+	448	74312910	-	SSON_2453	-	IS4 orf
2294	 51.19	0	2589467..2590900	+	477	74312911	-	SSON_2454	-	sucrose hydrolase
2295	 51.68	0	2590908..2591861	-	317	74312912	-	SSON_2455	-	sucrose operon repressor
2296	 48.40	0	2592134..2592352	+	72	74312913	-	SSON_2456	-	D-serine permease
2297	 50.79	0	2592370..2593698	+	442	74312914	dsdA	SSON_2457	-	D-serine dehydratase
2298	 41.65	-2	2593806..2595344	-	512	74312915	emrY	SSON_2458	-	multidrug resistance protein