IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2278	 49.07	0	2572741..2572956	-	71	74312895	ybcR	SSON_2438	-	hypothetical protein
2279	 54.37	0	2573396..2573899	+	167	74312896	-	SSON_2439	-	IS1 ORF
2280	 44.04	-1	2574305..2575387	+	360	74312897	nmpC	SSON_2440	-	outer membrane porin protein C precursor
2281	 42.71	-2	2575576..2575959	-	127	74312898	ybcQ	SSON_2441	-	hypothetical protein
2282	 47.10	-1	2576045..2576182	-	45	74312899	-	SSON_2442	-	hypothetical protein
2283	 52.34	0	2576182..2576544	-	120	74312900	rus	SSON_2443	-	endodeoxyribonuclease RUS
2284	 51.89	0	2576541..2576831	-	96	74312901	ybcO	SSON_2444	-	hypothetical protein
2285	 48.54	0	2576824..2576994	-	56	74312902	ninE	SSON_2445	-	prophage protein NinE
2286	 57.68	+1	2576994..2577449	-	151	74312903	ybcN	SSON_2446	-	hypothetical protein
2287	 52.89	0	2578955..2580115	+	386	74312904	-	SSON_2447	-	IS21 ORF1
2288	 52.63	0	2580128..2580925	+	265	74312905	-	SSON_2448	-	IS21 ORF2
2289	 54.17	0	2581007..2581510	+	167	74312906	-	SSON_2449	-	IS1 ORF
2290	 43.59	-1	2581659..2582906	+	415	74312907	lacY	SSON_2450	-	galactoside permease
2291	 54.37	0	2585110..2585613	-	167	74312908	-	SSON_2451	-	IS1 ORF
2292	 54.52	0	2586162..2587001	-	279	74312909	-	SSON_2452	-	IS911 ORF2
2293	 53.82	0	2587876..2589222	+	448	74312910	-	SSON_2453	-	IS4