IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2259	 52.72	0	2557879..2558301	-	140	74312876	-	SSON_2419	-	putative tail component of prophage
2260	 57.89	+1	2558317..2559057	-	246	74312877	-	SSON_2420	-	putative tail component of prophage
2261	 53.28	0	2559065..2559460	-	131	74312878	-	SSON_2421	-	putative tail component of prophage
2262	 55.27	0	2559457..2560035	-	192	74312879	-	SSON_2422	-	putative tail component of prophage
2263	 58.47	+1	2560047..2560400	-	117	74312880	-	SSON_2423	-	putative head-tail joining protein of prophage
2264	 55.89	+1	2560412..2560810	-	132	74312881	-	SSON_2424	-	putative DNA-packaging protein
2265	 56.04	+1	2560852..2561877	-	341	74312882	-	SSON_2425	-	putative major capsid protein
2266	 58.86	+1	2561933..2562265	-	110	74312883	-	SSON_2426	-	putative head decoration protein
2267	 60.58	+2	2562275..2563555	-	426	74312884	-	SSON_2427	-	putative minor capsid protein precursor
2268	 58.36	+1	2563575..2565176	-	533	74312885	-	SSON_2428	-	putative capsid structural protein of prophage
2269	 56.04	+1	2565173..2565379	-	68	74312886	-	SSON_2429	-	putative head-tail joining protein of prophage
2270	 54.10	0	2565376..2567301	-	641	74312887	-	SSON_2430	-	putative DNA packaging protein of prophage
2271	 52.75	0	2567276..2567821	-	181	74312888	nohB	SSON_2431	-	bacteriophage DNA packaging protein
2272	 31.69	-2	2568486..2568911	+	141	74312889	ydfO	SSON_2432	-	hypothetical protein
2273	 55.08	0	2569091..2569996	-	301	161986489	-	SSON_2433	-	insertion el