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Shigella sonnei Ss046, complete genome - 1..4825265 4219 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2256 56.06 +1 2554583..2554912 - 109 74312873 - SSON_2416 - putative minor tail protein 2257 57.92 +1 2554909..2557470 - 853 74312874 - SSON_2417 - putative tail length tape measure protein 2258 57.24 +1 2557463..2557897 - 144 74312875 - SSON_2418 - putative tail component of prophage 2259 52.72 0 2557879..2558301 - 140 74312876 - SSON_2419 - putative tail component of prophage 2260 57.89 +1 2558317..2559057 - 246 74312877 - SSON_2420 - putative tail component of prophage 2261 53.28 0 2559065..2559460 - 131 74312878 - SSON_2421 - putative tail component of prophage 2262 55.27 0 2559457..2560035 - 192 74312879 - SSON_2422 - putative tail component of prophage 2263 58.47 +1 2560047..2560400 - 117 74312880 - SSON_2423 - putative head-tail joining protein of prophage 2264 55.89 +1 2560412..2560810 - 132 74312881 - SSON_2424 - putative DNA-packaging protein 2265 56.04 +1 2560852..2561877 - 341 74312882 - SSON_2425 - putative major capsid protein 2266 58.86 +1 2561933..2562265 - 110 74312883 - SSON_2426 - putative head decoration protein 2267 60.58 +2 2562275..2563555 - 426 74312884 - SSON_2427 - putative minor capsid protein precursor 2268 58.36 +1 2563575..2565176 - 533 74312885 - SSON_2428 - putative capsid structural protein of prophage 2269 56.04 +1 2565173..2565379 - 68 74312886 - SSON_2429 - putative head-tail joining protein of prophage 2270 54.10 0 2565376..2567301 - 641 74312887 - SSON_2430 - putative DNA packaging protein of prophage 2271 52.75 0 2567276..2567821 - 181 74312888 nohB SSON_2431 - bacteriophage DNA packaging protein 2272 31.69 -2 2568486..2568911 + 141 74312889 ydfO SSON_2432 - hypothetical protein 2273 55.08 0 2569091..2569996 - 301 161986489 - SSON_2433 - insertion element IS2 transposase InsD 2274 53.01 0 2569954..2570319 - 121 74312891 - SSON_2434 - insertion sequence 2 OrfA protein 2275 53.10 0 2570836..2571093 - 85 74312892 - SSON_2435 - putative bacteriophage protein 2276 51.63 0 2571789..2572247 - 152 74312893 - SSON_2436 - putative endopeptidase 2277 47.79 0 2572244..2572741 - 165 74312894 - SSON_2437 - putative lysozyme 2278 49.07 0 2572741..2572956 - 71 74312895 ybcR SSON_2438 - hypothetical protein 2279 54.37 0 2573396..2573899 + 167 74312896 - SSON_2439 - IS1 ORF 2280 44.04 -1 2574305..2575387 + 360 74312897 nmpC SSON_2440 - outer membrane porin protein C precursor 2281 42.71 -2 2575576..2575959 - 127 74312898 ybcQ SSON_2441 - hypothetical protein 2282 47.10 -1 2576045..2576182 - 45 74312899 - SSON_2442 - hypothetical protein 2283 52.34 0 2576182..2576544 - 120 74312900 rus SSON_2443 - endodeoxyribonuclease RUS 2284 51.89 0 2576541..2576831 - 96 74312901 ybcO SSON_2444 - hypothetical protein 2285 48.54 0 2576824..2576994 - 56 74312902 ninE SSON_2445 - prophage protein NinE 2286 57.68 +1 2576994..2577449 - 151 74312903 ybcN SSON_2446 - hypothetical protein 2287 52.89 0 2578955..2580115 + 386 74312904 - SSON_2447 - IS21 ORF1 2288 52.63 0 2580128..2580925 + 265 74312905 - SSON_2448 - IS21 ORF2 2289 54.17 0 2581007..2581510 + 167 74312906 - SSON_2449 - IS1 ORF 2290 43.59 -1 2581659..2582906 + 415 74312907 lacY SSON_2450 - galactoside permease 2291 54.37 0 2585110..2585613 - 167 74312908 - SSON_2451 - IS1 ORF 2292 54.52 0 2586162..2587001 - 279 74312909 - SSON_2452 - IS911 ORF2 2293 53.82 0 2587876..2589222 + 448 74312910 - SSON_2453 - IS4 orf 2294 51.19 0 2589467..2590900 + 477 74312911 - SSON_2454 - sucrose hydrolase 2295 51.68 0 2590908..2591861 - 317 74312912 - SSON_2455 - sucrose operon repressor 2296 48.40 0 2592134..2592352 + 72 74312913 - SSON_2456 - D-serine permease 2297 50.79 0 2592370..2593698 + 442 74312914 dsdA SSON_2457 - D-serine dehydratase 2298 41.65 -2 2593806..2595344 - 512 74312915 emrY SSON_2458 - multidrug resistance protein Y 2299 41.92 -2 2595344..2596507 - 387 74312916 emrK SSON_2459 - multidrug resistance protein K 2300 40.33 -2 2596923..2597537 + 204 74312917 evgA SSON_2460 - DNA-binding transcriptional activator EvgA 2301 40.93 -2 2597542..2601135 + 1197 74312918 evgS SSON_2461 - hybrid sensory histidine kinase in two-component regulatory system with EvgA 2302 45.15 -1 2601191..2602375 - 394 74312919 yfdE SSON_2462 - hypothetical protein 2303 45.08 -1 2602410..2603354 - 314 74312920 - SSON_2463 - putative transporter YfdV 2304 46.61 -1 2603424..2605118 - 564 74312921 - SSON_2464 - putative oxalyl-CoA decarboxylase 2305 47.00 -1 2605172..2606422 - 416 74312922 - SSON_2465 - formyl-coenzyme A transferase 2306 46.15 -1 2606935..2607558 - 207 74312923 - SSON_2466 - hypothetical protein 2307 38.04 -2 2607855..2608130 + 91 74312924 - SSON_2467 - hypothetical protein 2308 48.15 0 2608207..2608449 - 80 74312925 yfdY SSON_2468 - hypothetical protein 2309 51.47 0 2608802..2609722 + 306 161986488 ddg SSON_2469 - lipid A biosynthesis palmitoleoyl acyltransferase 2310 55.37 0 2610214..2611452 - 412 74312927 - SSON_2470 - aminotransferase 2311 54.37 0 2612648..2613151 + 167 74312928 - SSON_2472 - IS1 ORF 2312 47.48 0 2614318..2615052 + 244 74312929 - SSON_2473 - putative 2-component transcriptional regulator 2313 53.26 0 2615065..2615922 + 285 74312930 - SSON_2474 - putative ARAC-type regulatory protein 2314 56.84 +1 2618445..2619482 - 345 74312931 - SSON_2476 - exoaminopeptidase 2315 54.17 0 2620582..2621829 - 415 74312932 - SSON_2478 - putative transport protein 2316 50.15 0 2621851..2622177 - 108 74312933 - SSON_2479 - putative PTS system enzyme IIB component 2317 50.62 0 2622397..2623362 - 321 74312934 glk SSON_2480 - glucokinase 2318 53.70 0 2623566..2624822 + 418 74312935 - SSON_2481 - hypothetical protein 2319 52.29 0 2624937..2625263 + 108 74312936 - SSON_2482 - hypothetical protein 2320 53.27 0 2625404..2626642 - 412 74312938 - SSON_2484 - manganese transport protein MntH 2321 49.63 0 2626978..2628180 + 400 74312939 nupC SSON_2485 - permease of transport system for 3 nucleosides 2322 50.28 0 2631038..2631397 + 119 74312940 yfeC SSON_2489 - hypothetical protein 2323 46.31 -1 2631399..2631791 + 130 74312941 yfeD SSON_2490 - hypothetical protein 2324 52.68 0 2631843..2633258 - 471 74312942 gltX SSON_2491 - glutamyl-tRNA synthetase 2325 42.69 -2 2634191..2634532 + 113 74312943 flxA SSON_2496 - hypothetical protein 2326 53.72 0 2634523..2635449 - 308 74312944 yfeR SSON_2497 - putative transcriptional regulator LYSR-type 2327 51.75 0 2635539..2636537 + 332 74312945 yfeH SSON_2498 - putative cytochrome oxidase 2328 51.60 0 2636534..2636752 - 72 74312946 ypeB SSON_2499 - putative cytoplasmic protein 2329 54.37 0 2636754..2638769 - 671 74312947 ligA SSON_2500 - NAD-dependent DNA ligase LigA 2330 55.12 0 2638840..2639826 - 328 74312948 zipA SSON_2501 - cell division protein ZipA 2331 50.13 0 2640056..2640817 + 253 74312949 cysZ SSON_2502 - putative sulfate transport protein CysZ 2332 50.10 0 2641002..2641973 + 323 74312950 cysK SSON_2503 - cysteine synthase A 2333 50.78 0 2642357..2642614 + 85 74312951 ptsH SSON_2504 - phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr) 2334 49.65 0 2642659..2644386 + 575 74312952 ptsI SSON_2505 - phosphoenolpyruvate-protein phosphotransferase 2335 47.06 -1 2644427..2644936 + 169 74312953 crr SSON_2506 - glucose-specific PTS system component 2336 53.90 0 2645037..2646383 + 448 74312954 - SSON_2507 - IS4 orf 2337 51.88 0 2646416..2647267 - 283 74312955 pdxK SSON_2508 - pyridoxal kinase 2338 46.88 -1 2647372..2647740 + 122 74312956 yfeK SSON_2509 - hypothetical protein 2339 55.59 0 2647743..2648654 - 303 74312957 cysM SSON_2510 - cysteine synthase B 2340 58.93 +1 2648788..2649885 - 365 74312958 cysA SSON_2511 - sulfate/thiosulfate transporter subunit 2341 56.05 +1 2649875..2650750 - 291 74312959 cysW SSON_2512 - sulfate/thiosulfate transporter permease subunit 2342 55.16 0 2650750..2651583 - 277 74312960 cysU SSON_2513 - sulfate/thiosulfate transporter subunit 2343 53.29 0 2651583..2652599 - 338 74312961 cysP SSON_2514 - thiosulfate transporter subunit 2344 55.43 0 2652770..2653561 - 263 161986487 ucpA SSON_2515 - short chain dehydrogenase 2345 51.40 0 2653690..2654547 - 285 74312963 yfeT SSON_2516 - hypothetical protein 2346 53.73 0 2654711..2655607 + 298 74312964 murQ SSON_2517 - N-acetylmuramic acid-6-phosphate etherase 2347 51.80 0 2657040..2658344 + 434 161986486 - SSON_2519 - hypothetical protein 2348 55.56 0 2658402..2659328 - 308 74312966 - SSON_2520 - hypothetical protein 2349 50.69 0 2659397..2659972 - 191 74312967 - SSON_2521 - hypothetical protein 2350 52.41 0 2660033..2660488 - 151 74312968 yfeZ SSON_2522 - hypothetical protein 2351 51.41 0 2660469..2660894 - 141 161986485 - SSON_2523 - putative acetyltransferase 2352 50.46 0 2661108..2661977 + 289 74312970 amiA SSON_2524 - N-acetylmuramoyl-l-alanine amidase I 2353 54.78 0 2661981..2662880 + 299 74312971 hemF SSON_2525 - coproporphyrinogen III oxidase 2354 53.18 0 2662886..2663938 - 350 74312972 yfeG SSON_2526 - transcriptional regulator EutR 2355 57.99 +1 2663984..2664490 - 168 74312973 - SSON_2527 - hypothetical protein 51.65 MEAN 4.20 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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