IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2253	 57.50	+1	2552567..2553199	-	210	74312870	-	SSON_2413	-	putative tail component of prophage
2254	 59.54	+1	2553136..2553879	-	247	74312871	-	SSON_2414	-	tail assembly protein
2255	 55.22	0	2553885..2554583	-	232	74312872	-	SSON_2415	-	putative minor tail protein
2256	 56.06	+1	2554583..2554912	-	109	74312873	-	SSON_2416	-	putative minor tail protein
2257	 57.92	+1	2554909..2557470	-	853	74312874	-	SSON_2417	-	putative tail length tape measure protein
2258	 57.24	+1	2557463..2557897	-	144	74312875	-	SSON_2418	-	putative tail component of prophage
2259	 52.72	0	2557879..2558301	-	140	74312876	-	SSON_2419	-	putative tail component of prophage
2260	 57.89	+1	2558317..2559057	-	246	74312877	-	SSON_2420	-	putative tail component of prophage
2261	 53.28	0	2559065..2559460	-	131	74312878	-	SSON_2421	-	putative tail component of prophage
2262	 55.27	0	2559457..2560035	-	192	74312879	-	SSON_2422	-	putative tail component of prophage
2263	 58.47	+1	2560047..2560400	-	117	74312880	-	SSON_2423	-	putative head-tail joining protein of prophage
2264	 55.89	+1	2560412..2560810	-	132	74312881	-	SSON_2424	-	putative DNA-packaging protein
2265	 56.04	+1	2560852..2561877	-	341	74312882	-	SSON_2425	-	putative major capsid protein
2266	 58.86	+1	2561933..2562265	-	110	74312883	-	SSON_2426	-	putative head decoration protein
2267	 60.58	+2	2562275..2563555	-	426	74312884	-	SSON_2427	-	putative minor capsid protein precursor
2268	 58.36	+1	2563