IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1947	 55.18	0	2185020..2186090	+	356	74312564	hisC	SSON_2092	-	histidinol-phosphate aminotransferase
1948	 53.46	0	2186090..2187157	+	355	161986513	hisB	SSON_2093	-	imidazole glycerol-phosphate dehydratase/histidinol phosphatase
1949	 55.67	0	2187157..2187747	+	196	74312566	hisH	SSON_2094	-	imidazole glycerol phosphate synthase subunit HisH
1950	 57.05	+1	2187747..2188484	+	245	161986512	hisA	SSON_2095	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
1951	 51.87	0	2188466..2189242	+	258	74312568	hisF	SSON_2096	-	imidazole glycerol phosphate synthase subunit HisF
1952	 53.27	0	2189236..2189847	+	203	74312569	hisI	SSON_2097	-	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein
1953	 45.76	-1	2189944..2190957	-	337	74312570	wzzB	SSON_2098	-	regulator of length of O-antigen component of lipopolysaccharide chains
1954	 43.44	-1	2191067..2192233	-	388	74312571	ugd	SSON_2099	-	UDP-glucose 6-dehydrogenase
1955	 50.82	0	2192483..2193889	-	468	74312572	gnd	SSON_2100	-	6-phosphogluconate dehydrogenase
1956	 54.56	0	2194053..2195423	-	456	74312573	cpsG	SSON_2101	-	phosphomannomutase
1957	 55.53	0	2195528..2196964	-	478	74312574	cpsB	SSON_2102	-	mannose-1-phosphate guanyltransferase
1958	 55.56	0	2196967..2198190	-	407	74312575	wcaI	SSON_2103	-	glycosyl transferase
1959	 56.11	+1	2198187..2198669	-	160	74312576	wcaH	SSON_2104	-	GDP-mannose mannosyl hydrolase
1960	 56.31	+1	2198669..2199634	-	321	74312577	wcaG	SSON_2105	-	putative nucleotide di-P-sugar epimerase or dehydratase
1961	 54.55	0	2199637..2200758	-	373