IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1938	 50.24	0	2177089..2178147	-	352	74312555	yeeE	SSON_2083	-	putative transport system permease protein
1939	 52.31	0	2178326..2179690	-	454	74312556	yeeF	SSON_2084	-	putative amino acid/amine transport protein
1940	 51.21	0	2179951..2180901	-	316	74312557	yeeY	SSON_2085	-	putative transcriptional regulator LYSR-type
1941	 52.00	0	2180926..2181750	-	274	74312558	-	SSON_2086	-	putative enzyme of sugar metabolism
1942	 43.92	-1	2181833..2182087	-	84	74312559	-	SSON_2087	-	hypothetical protein
1943	 47.62	0	2182084..2182335	-	83	74312560	yefM	SSON_2088	-	antitoxin YefM
1944	 43.14	-2	2182618..2182668	+	16	74312561	hisL	SSON_2089	-	his operon leader peptide
1945	 54.44	0	2182814..2183713	+	299	74312562	hisG	SSON_2090	-	ATP phosphoribosyltransferase
1946	 57.39	+1	2183719..2185023	+	434	74312563	hisD	SSON_2091	-	histidinol dehydrogenase
1947	 55.18	0	2185020..2186090	+	356	74312564	hisC	SSON_2092	-	histidinol-phosphate aminotransferase
1948	 53.46	0	2186090..2187157	+	355	161986513	hisB	SSON_2093	-	imidazole glycerol-phosphate dehydratase/histidinol phosphatase
1949	 55.67	0	2187157..2187747	+	196	74312566	hisH	SSON_2094	-	imidazole glycerol phosphate synthase subunit HisH
1950	 57.05	+1	2187747..2188484	+	245	161986512	hisA	SSON_2095	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
1951	 51.87	0	2188466..2189242	+	258	74312568	hisF	SSON_2096	-	imidazole glycerol phosphate synthase subunit HisF
1952	 53.27	0	2189236..2189847	+	203