IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1914	 54.12	0	2157301..2158113	+	270	74312531	pduB	SSON_2059	-	putative propanediol utilization protein: polyhedral bodies
1915	 51.17	0	2158132..2159796	+	554	74312532	pduC	SSON_2060	-	putative propanediol utilization protein: glycerol dehydratase large subunit
1916	 49.78	0	2159806..2160474	+	222	74312533	pduD	SSON_2061	-	putative propanediol utilization protein: diol dehydratase medium subunit
1917	 48.17	0	2160489..2161007	+	172	74312534	pduE	SSON_2062	-	putative propanediol utilization protein: diol dehydratase small subunit
1918	 52.97	0	2161017..2162849	+	610	74312535	pduG	SSON_2063	-	putative propanediol utilization protein: diol dehydratase reactivation
1919	 50.71	0	2162839..2163189	+	116	74312536	pduH	SSON_2064	-	putative propanediol utilization protein: diol dehydratase reactivation
1920	 52.90	0	2163209..2163484	+	91	74312537	pduJ	SSON_2065	-	putative propanediol utilization protein: polyhedral bodies
1921	 55.56	0	2163508..2163930	+	140	74312538	pduK	SSON_2066	-	putative propanediol utilization protein: polyhedral bodies
1922	 52.61	0	2163933..2164565	+	210	74312539	pduL	SSON_2067	-	putative propanediol utilization protein
1923	 47.76	0	2164562..2165053	+	163	74312540	pduM	SSON_2068	-	putative propanediol utilization protein
1924	 56.88	+1	2165057..2165332	+	91	74312541	pduN	SSON_2069	-	putative propanediol utilization protein: polyhedral bodies
1925	 52.78	0	2165344..2166351	+	335	74312542	pduO	SSON_2070	-	putative propanediol utilization protein: B12 related
1926	 51.31	0	2166549..2167733	+	394	74312543	pduP	SSON_2071	-	putative propanediol utilization protein: CoA-dependent propionaldehyde dehydrogenase
1927	 51.30	0	2167744..2168856	+	370