IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1907	 52.41	0	2151391..2152470	-	359	74312524	cobT	SSON_2052	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
1908	 53.23	0	2152482..2153225	-	247	74312525	cobS	SSON_2053	-	cobalamin synthase
1909	 50.92	0	2153222..2153767	-	181	74312526	cobU	SSON_2054	-	adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase
1910	 45.98	-1	2153901..2154398	-	165	74312527	-	SSON_2055	-	hypothetical protein
1911	 45.37	-1	2154849..2155496	-	215	74312528	pocR	SSON_2056	-	pdu/cob regulatory protein
1912	 47.65	0	2155699..2156508	-	269	74312529	pduF	SSON_2057	-	propanediol diffusion facilitator
1913	 52.63	0	2157020..2157304	+	94	74312530	pduA	SSON_2058	-	putative propanediol utilization protein: polyhedral bodies
1914	 54.12	0	2157301..2158113	+	270	74312531	pduB	SSON_2059	-	putative propanediol utilization protein: polyhedral bodies
1915	 51.17	0	2158132..2159796	+	554	74312532	pduC	SSON_2060	-	putative propanediol utilization protein: glycerol dehydratase large subunit
1916	 49.78	0	2159806..2160474	+	222	74312533	pduD	SSON_2061	-	putative propanediol utilization protein: diol dehydratase medium subunit
1917	 48.17	0	2160489..2161007	+	172	74312534	pduE	SSON_2062	-	putative propanediol utilization protein: diol dehydratase small subunit
1918	 52.97	0	2161017..2162849	+	610	74312535	pduG	SSON_2063	-	putative propanediol utilization protein: diol dehydratase reactivation
1919	 50.71	0	2162839..2163189	+	116	74312536	pduH	SSON_2064	-	putative propanediol utilization protein: diol dehydratase reactivation
1920	 52.90	0	2163209..2163484	+	91	74312537	pduJ	SSON_2065	-	putative propanediol ut