IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1896	 45.88	-1	2127676..2128512	+	278	74312513	-	SSON_2035	-	hypothetical protein
1897	 54.52	0	2134963..2135802	-	279	74312514	-	SSON_2038	-	IS911 ORF2
1898	 52.91	0	2137314..2138345	+	343	74312515	-	SSON_2039	-	IS630 orf
1899	 40.98	-2	2138736..2139062	-	108	74312516	-	SSON_2040	-	hypothetical protein
1900	 54.37	0	2141363..2141866	+	167	74312517	-	SSON_2041	-	IS1 ORF
1901	 48.26	0	2142001..2142951	+	316	74312518	cbl	SSON_2042	-	transcriptional regulator Cbl
1902	 48.45	0	2143072..2144712	+	546	74312519	yeeO	SSON_2044	-	hypothetical protein
1903	 39.89	-2	2145341..2146057	-	238	74312520	-	SSON_2046	-	hypothetical protein
1904	 49.76	0	2146388..2147842	-	484	74312521	amn	SSON_2047	-	AMP nucleosidase
1905	 54.37	0	2148274..2148777	-	167	74312522	-	SSON_2048	-	IS1 ORF
1906	 48.08	0	2149000..2149935	-	311	74312523	nac	SSON_2049	-	nitrogen assimilation transcriptional regulator
1907	 52.41	0	2151391..2152470	-	359	74312524	cobT	SSON_2052	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
1908	 53.23	0	2152482..2153225	-	247	74312525	cobS	SSON_2053	-	cobalamin synthase
1909	 50.92	0	2153222..2153767	-	181	74312526	cobU	SSON_2054	-	adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase
1910	 45.98	-1	2153901..2154398	-	165	74312527	-	SSON_2055	-	hypothetical protein
1911	 45.37	-1	2154849..2155496	-	215