IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1887	 53.41	0	2118353..2118631	+	92	74312504	-	SSON_2024	-	IS2 orf1
1888	 55.19	0	2118589..2119494	+	301	161986516	-	SSON_2025	-	insertion element IS2 transposase InsD
1889	 39.51	-2	2119522..2120880	-	452	74312506	yedV	SSON_2026	-	putative 2-component sensor protein
1890	 44.20	-1	2120880..2121551	-	223	161986515	yedW	SSON_2027	-	transcriptional regulatory protein YedW
1891	 55.08	0	2122002..2122907	+	301	161986514	-	SSON_2028	-	insertion element IS2 transposase InsD
1892	 42.03	-2	2123020..2123433	+	137	74312509	yedX	SSON_2029	-	hypothetical protein
1893	 52.34	0	2123542..2124546	+	334	74312510	-	SSON_2030	-	putative sulfite oxidase subunit YedY
1894	 48.27	0	2124547..2125182	+	211	74312511	-	SSON_2031	-	putative sulfite oxidase subunit YedZ
1895	 37.94	-2	2125439..2126089	+	216	74312512	-	SSON_2032	-	hypothetical protein
1896	 45.88	-1	2127676..2128512	+	278	74312513	-	SSON_2035	-	hypothetical protein
1897	 54.52	0	2134963..2135802	-	279	74312514	-	SSON_2038	-	IS911 ORF2
1898	 52.91	0	2137314..2138345	+	343	74312515	-	SSON_2039	-	IS630 orf
1899	 40.98	-2	2138736..2139062	-	108	74312516	-	SSON_2040	-	hypothetical protein
1900	 54.37	0	2141363..2141866	+	167	74312517	-	SSON_2041	-	IS1 ORF
1901	 48.26	0	2142001..2142951	+	316	74312518	cbl	SSON_2042	-	transcriptional regulator Cbl
1902	 48.45	0	2143072..2144712	+	546