IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1871	 53.12	0	2102815..2103552	+	245	74312488	fliP	SSON_2006	-	flagellar biosynthesis protein FliP
1872	 51.48	0	2103562..2103831	+	89	74312489	fliQ	SSON_2007	-	flagellar biosynthesis protein FliQ
1873	 47.71	0	2103840..2104625	+	261	74312490	fliR	SSON_2008	-	flagellar biosynthesis protein FliR
1874	 37.50	-2	2104910..2105533	+	207	74312491	rcsA	SSON_2009	-	positive regulator for ctr capsule biosynthesis
1875	 51.32	0	2105577..2105765	-	62	74312492	dsrB	SSON_2010	-	hypothetical protein
1876	 48.56	0	2105913..2106155	+	80	74312493	-	SSON_2011	-	hypothetical protein
1877	 52.21	0	2106453..2107268	+	271	74312494	-	SSON_2012	-	mannosyl-3-phosphoglycerate phosphatase
1878	 51.70	0	2107265..2108974	-	569	74312495	-	SSON_2013	-	hypothetical protein
1879	 52.46	0	2109130..2109312	-	60	74312496	-	SSON_2014	-	hypothetical protein
1880	 53.27	0	2109391..2110308	-	305	74312497	yedI	SSON_2015	-	hypothetical protein
1881	 55.63	0	2111391..2111861	-	156	74312498	vsr	SSON_2017	-	DNA mismatch endonuclease
1882	 51.94	0	2111842..2113260	-	472	74312499	dcm	SSON_2018	-	DNA cytosine methylase
1883	 54.19	0	2113327..2113983	-	218	74312500	yedJ	SSON_2019	-	hypothetical protein
1884	 49.48	0	2114023..2114406	-	127	74312501	-	SSON_2020	-	hypothetical protein
1885	 54.37	0	2116005..2116508	+	167	74312502	-	SSON_2022	-	IS1 ORF
1886	 48.83	0	2117486..2118337	+	283	74312503	yedU	SSON_2023	-	chaperone protein HchA
1887	 53.41	0	2118353..2118631	+	92	74312504	-	SSON_2024	-	IS2 orf1
1888	 55.19	0	2118589..2119494	+	301	161986516	-	SSON_2025	-	insertion element IS2 transposase InsD
1889	 39.51	-2	2119522..2120880	-	452	74312506	yedV	SSON_2026	-	putative 2-component sensor protein
1890	 44.20	-1	2120880..2121551	-	223	161986515	yedW	SSON_2027	-	transcriptional regulatory protein YedW
1891	 55.08	0	2122002..2122907	+	301	161986514	-	SSON_2028	-	insertion element IS2 transposase InsD
1892	 42.03	-2	2123020..2123433	+	137	74312509	yedX	SSON_2029	-	hypothetical protein
1893	 52.34	0	2123542..2124546	+	334	74312510	-	SSON_2030	-	putative sulfite oxidase subunit YedY
1894	 48.27	0	2124547..2125182	+	211	74312511	-	SSON_2031	-	putative sulfite oxidase subunit YedZ
1895	 37.94	-2	2125439..2126089	+	216	74312512	-	SSON_2032	-	hypothetical protein
1896	 45.88	-1	2127676..2128512	+	278	74312513	-	SSON_2035	-	hypothetical protein
1897	 54.52	0	2134963..2135802	-	279	74312514	-	SSON_2038	-	IS911 ORF2
1898	 52.91	0	2137314..2138345	+	343	74312515	-	SSON_2039	-	IS630 orf
1899	 40.98	-2	2138736..2139062	-	108	74312516	-	SSON_2040	-	hypothetical protein
1900	 54.37	0	2141363..2141866	+	167	74312517	-	SSON_2041	-	IS1 ORF
1901	 48.26	0	2142001..2142951	+	316	74312518	cbl	SSON_2042	-	transcriptional regulator Cbl
1902	 48.45	0	2143072..2144712	+	546	74312519	yeeO	SSON_2044	-	hypothetical protein
1903	 39.89	-2	2145341..2146057	-	238	74312520	-	SSON_2046	-	hypothetical protein
1904	 49.76	0	2146388..2147842	-	484	74312521	amn	SSON_2047	-	AMP nucleosidase
1905	 54.37	0	2148274..2148777	-	167	74312522	-	SSON_2048	-	IS1 ORF
1906	 48.08	0	2149000..2149935	-	311	74312523	nac	SSON_2049	-	nitrogen assimilation transcriptional regulator
1907	 52.41	0	2151391..2152470	-	359	74312524	cobT	SSON_2052	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
1908	 53.23	0	2152482..2153225	-	247	74312525	cobS	SSON_2053	-	cobalamin synthase
1909	 50.92	0	2153222..2153767	-	181	74312526	cobU	SSON_2054	-	adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase
1910	 45.98	-1	2153901..2154398	-	165	74312527	-	SSON_2055	-	hypothetical protein
1911	 45.37	-1	2154849..2155496	-	215	74312528	pocR	SSON_2056	-	pdu/cob regulatory protein
1912	 47.65	0	2155699..2156508	-	269	74312529	pduF	SSON_2057	-	propanediol diffusion facilitator
1913	 52.63	0	2157020..2157304	+	94	74312530	pduA	SSON_2058	-	putative propanediol utilization protein: polyhedral bodies
1914	 54.12	0	2157301..2158113	+	270	74312531	pduB	SSON_2059	-	putative propanediol utilization protein: polyhedral bodies
1915	 51.17	0	2158132..2159796	+	554	74312532	pduC	SSON_2060	-	putative propanediol utilization protein: glycerol dehydratase large subunit
1916	 49.78	0	2159806..2160474	+	222	74312533	pduD	SSON_2061	-	putative propanediol utilization protein: diol dehydratase medium subunit
1917	 48.17	0	2160489..2161007	+	172	74312534	pduE	SSON_2062	-	putative propanediol utilization protein: diol dehydratase small subunit
1918	 52.97	0	2161017..2162849	+	610	74312535	pduG	SSON_2063	-	putative propanediol utilization protein: diol dehydratase reactivation
1919	 50.71	0	2162839..2163189	+	116	74312536	pduH	SSON_2064	-	putative propanediol utilization protein: diol dehydratase reactivation
1920	 52.90	0	2163209..2163484	+	91	74312537	pduJ	SSON_2065	-	putative propanediol utilization protein: polyhedral bodies
1921	 55.56	0	2163508..2163930	+	140	74312538	pduK	SSON_2066	-	putative propanediol utilization protein: polyhedral bodies
1922	 52.61	0	2163933..2164565	+	210	74312539	pduL	SSON_2067	-	putative propanediol utilization protein
1923	 47.76	0	2164562..2165053	+	163	74312540	pduM	SSON_2068	-	putative propanediol utilization protein
1924	 56.88	+1	2165057..2165332	+	91	74312541	pduN	SSON_2069	-	putative propanediol utilization protein: polyhedral bodies
1925	 52.78	0	2165344..2166351	+	335	74312542	pduO	SSON_2070	-	putative propanediol utilization protein: B12 related
1926	 51.31	0	2166549..2167733	+	394	74312543	pduP	SSON_2071	-	putative propanediol utilization protein: CoA-dependent propionaldehyde dehydrogenase
1927	 51.30	0	2167744..2168856	+	370	74312544	pduQ	SSON_2072	-	putative propanediol utilization protein: propanol dehydrogenase
1928	 54.26	0	2168853..2169755	+	300	74312545	pduS	SSON_2073	-	putative propanediol utilization protein: ferredoxin
1929	 53.51	0	2170201..2170755	+	184	74312546	pduT	SSON_2074	-	putative propanediol utilization protein: polyhedral bodies
1930	 49.29	0	2170755..2171105	+	116	74312547	pduU	SSON_2075	-	putative propanediol utilization protein: polyhedral bodies
1931	 50.00	0	2171110..2171553	+	147	74312548	pduV	SSON_2076	-	putative propanediol utilization protein
1932	 46.72	-1	2171654..2172049	-	131	74312549	yeeX	SSON_2077	-	hypothetical protein
1933	 50.52	0	2172155..2173213	-	352	74312550	yeeA	SSON_2078	-	hypothetical protein
1934	 46.84	-1	2173411..2173884	-	157	74312551	sbmC	SSON_2079	-	DNA gyrase inhibitor
1935	 49.45	0	2174003..2175175	-	390	74312552	dacD	SSON_2080	-	D-alanyl-D-alanine carboxypeptidase
1936	 50.28	0	2175378..2176805	+	475	74312553	sbcB	SSON_2081	-	exonuclease I
1937	 51.32	0	2176848..2177075	-	75	74312554	yeeD	SSON_2082	-	hypothetical protein
1938	 50.24	0	2177089..2178147	-	352	74312555	yeeE	SSON_2083	-	putative transport system permease protein
1939	 52.31	0	2178326..2179690	-	454	74312556	yeeF	SSON_2084	-	putative amino acid/amine transport protein
1940	 51.21	0	2179951..2180901	-	316	74312557	yeeY	SSON_2085	-	putative transcriptional regulator LYSR-type
1941	 52.00	0	2180926..2181750	-	274	74312558	-	SSON_2086	-	putative enzyme of sugar metabolism
1942	 43.92	-1	2181833..2182087	-	84	74312559	-	SSON_2087	-	hypothetical protein
1943	 47.62	0	2182084..2182335	-	83	74312560	yefM	SSON_2088	-	antitoxin YefM
1944	 43.14	-2	2182618..2182668	+	16	74312561	hisL	SSON_2089	-	his operon leader peptide
1945	 54.44	0	2182814..2183713	+	299	74312562	hisG	SSON_2090	-	ATP phosphoribosyltransferase
1946	 57.39	+1	2183719..2185023	+	434	74312563	hisD	SSON_2091	-	histidinol dehydrogenase
1947	 55.18	0	2185020..2186090	+	356	74312564	hisC	SSON_2092	-	histidinol-phosphate aminotransferase
1948	 53.46	0	2186090..2187157	+	355	161986513	hisB	SSON_2093	-	imidazole glycerol-phosphate dehydratase/histidinol phosphatase
1949	 55.67	0	2187157..2187747	+	196	74312566	hisH	SSON_2094	-	imidazole glycerol phosphate synthase subunit HisH
1950	 57.05	+1	2187747..2188484	+	245	161986512	hisA	SSON_2095	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
1951	 51.87	0	2188466..2189242	+	258	74312568	hisF	SSON_2096	-	imidazole glycerol phosphate synthase subunit HisF
1952	 53.27	0	2189236..2189847	+	203	74312569	hisI	SSON_2097	-	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein
1953	 45.76	-1	2189944..2190957	-	337	74312570	wzzB	SSON_2098	-	regulator of length of O-antigen component of lipopolysaccharide chains
1954	 43.44	-1	2191067..2192233	-	388	74312571	ugd	SSON_2099	-	UDP-glucose 6-dehydrogenase
1955	 50.82	0	2192483..2193889	-	468	74312572	gnd	SSON_2100	-	6-phosphogluconate dehydrogenase
1956	 54.56	0	2194053..2195423	-	456	74312573	cpsG	SSON_2101	-	phosphomannomutase
1957	 55.53	0	2195528..2196964	-	478	74312574	cpsB	SSON_2102	-	mannose-1-phosphate guanyltransferase
1958	 55.56	0	2196967..2198190	-	407	74312575	wcaI	SSON_2103	-	glycosyl transferase
1959	 56.11	+1	2198187..2198669	-	160	74312576	wcaH	SSON_2104	-	GDP-mannose mannosyl hydrolase
1960	 56.31	+1	2198669..2199634	-	321	74312577	wcaG	SSON_2105	-	putative nucleotide di-P-sugar epimerase or dehydratase
1961	 54.55	0	2199637..2200758	-	373	74312578	gmd	SSON_2106	-	GDP-D-mannose dehydratase
1962	 47.91	0	2200784..2201332	-	182	74312579	wcaF	SSON_2107	-	putative colanic acid biosynthesis acetyltransferase WcaF
1963	 45.38	-1	2201348..2202094	-	248	74312580	wcaE	SSON_2108	-	glycosyl transferase
1964	 42.69	-2	2202105..2203322	-	405	74312581	wcaD	SSON_2109	-	putative colanic acid biosynthesis protein
1965	 53.78	0	2203297..2204514	-	405	74312582	wcaC	SSON_2110	-	glycosyl transferase
1966	 53.78	0	2204511..2204999	-	162	74312583	wcaB	SSON_2111	-	putative colanic acid biosynthesis acetyltransferase WcaB
1967	 50.48	0	2205002..2205841	-	279	74312584	wcaA	SSON_2112	-	glycosyl transferase
1968	 53.35	0	2205934..2208096	-	720	161986511	-	SSON_2113	-	tyrosine kinase
1969	 53.83	0	2208099..2208542	-	147	74312586	wzb	SSON_2114	-	tyrosine phosphatase
1970	 53.25	0	2208548..2209687	-	379	74312587	wza	SSON_2115	-	putative polysaccharide export protein
51.65	MEAN

4.20	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.