IslandPathversion 1.0

IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1871	 53.12	0	2102815..2103552	+	245	74312488	fliP	SSON_2006	-	flagellar biosynthesis protein FliP
1872	 51.48	0	2103562..2103831	+	89	74312489	fliQ	SSON_2007	-	flagellar biosynthesis protein FliQ
1873	 47.71	0	2103840..2104625	+	261	74312490	fliR	SSON_2008	-	flagellar biosynthesis protein FliR
1874	 37.50	-2	2104910..2105533	+	207	74312491	rcsA	SSON_2009	-	positive regulator for ctr capsule biosynthesis
1875	 51.32	0	2105577..2105765	-	62	74312492	dsrB	SSON_2010	-	hypothetical protein
1876	 48.56	0	2105913..2106155	+	80	74312493	-	SSON_2011	-	hypothetical protein
1877	 52.21	0	2106453..2107268	+	271	74312494	-	SSON_2012	-	mannosyl-3-phosphoglycerate phosphatase
1878	 51.70	0	2107265..2108974	-	569	74312495	-	SSON_2013	-	hypothetical protein
1879	 52.46	0	2109130..2109312	-	60	74312496	-	SSON_2014	-	hypothetical protein
1880	 53.27	0	2109391..2110308	-	305	74312497	yedI	SSON_2015	-	hypothetical protein
1881	 55.63	0	2111391..2111861	-	156	74312498	vsr	SSON_2017	-	DNA mismatch endonuclease
1882	 51.94	0	2111842..2113260	-	472	74312499	dcm	SSON_2018	-	DNA cytosine methylase
1883	 54.19	0	2113327..2113983	-	218	74312500	yedJ	SSON_2019	-	hypothetical protein
1884	 49.48	0	2114023..2114406	-	127	74312501	-	SSON_2020	-	hypothetical protein
1885	 54.37	0	2116005..2116508	+	167	74312502	-	SSON_2022	-	IS1 ORF
1886	 48.83	0	2117486..2118337	+	283