IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1862	 55.72	0	2095826..2096821	+	331	74312479	fliG	SSON_1997	-	flagellar motor switch protein G
1863	 57.21	+1	2096814..2097500	+	228	161986517	fliH	SSON_1998	-	flagellar assembly protein H
1864	 58.01	+1	2097500..2098873	+	457	74312481	fliI	SSON_1999	-	flagellum-specific ATP synthase
1865	 52.70	0	2098892..2099335	+	147	74312482	fliJ	SSON_2000	-	flagellar biosynthesis chaperone
1866	 54.96	0	2099332..2100459	+	375	74312483	fliK	SSON_2001	-	flagellar hook-length control protein
1867	 52.69	0	2100564..2101028	+	154	74312484	fliL	SSON_2002	-	flagellar basal body-associated protein FliL
1868	 52.94	0	2101033..2102037	+	334	74312485	fliM	SSON_2003	-	flagellar motor switch protein FliM
1869	 54.83	0	2102034..2102447	+	137	74312486	fliN	SSON_2004	-	flagellar motor switch protein FliN
1870	 54.92	0	2102450..2102815	+	121	74312487	fliO	SSON_2005	-	flagellar biosynthesis protein FliO
1871	 53.12	0	2102815..2103552	+	245	74312488	fliP	SSON_2006	-	flagellar biosynthesis protein FliP
1872	 51.48	0	2103562..2103831	+	89	74312489	fliQ	SSON_2007	-	flagellar biosynthesis protein FliQ
1873	 47.71	0	2103840..2104625	+	261	74312490	fliR	SSON_2008	-	flagellar biosynthesis protein FliR
1874	 37.50	-2	2104910..2105533	+	207	74312491	rcsA	SSON_2009	-	positive regulator for ctr capsule biosynthesis
1875	 51.32	0	2105577..2105765	-	62	74312492	dsrB	SSON_2010	-	hypothetical protein
1876	 48.56	0	2105913..2106155	+	80	74312493	-	SSON_2011	-	hypothet