IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1854	 54.37	0	2088805..2089308	-	167	74312471	-	SSON_1989	-	IS1 ORF
1855	 52.46	0	2089704..2090069	+	121	74312472	-	SSON_1990	-	insertion sequence 2 OrfA protein
1856	 54.64	0	2090027..2090932	+	301	161986518	-	SSON_1991	-	insertion element IS2 transposase InsD
1857	 37.84	-2	2091452..2092249	-	265	74312474	ybcM	SSON_1992	-	putative ARAC-type regulatory protein
1858	 44.38	-1	2092259..2092810	-	183	74312475	ybcL	SSON_1993	-	putative kinase inhibitor
1859	 43.54	-1	2092979..2093311	-	110	74312476	emrE	SSON_1994	-	multidrug efflux protein
1860	 53.97	0	2093645..2093959	-	104	74312477	fliE	SSON_1995	-	flagellar hook-basal body protein FliE
1861	 54.67	0	2094175..2095833	+	552	74312478	fliF	SSON_1996	-	flagellar MS-ring protein
1862	 55.72	0	2095826..2096821	+	331	74312479	fliG	SSON_1997	-	flagellar motor switch protein G
1863	 57.21	+1	2096814..2097500	+	228	161986517	fliH	SSON_1998	-	flagellar assembly protein H
1864	 58.01	+1	2097500..2098873	+	457	74312481	fliI	SSON_1999	-	flagellum-specific ATP synthase
1865	 52.70	0	2098892..2099335	+	147	74312482	fliJ	SSON_2000	-	flagellar biosynthesis chaperone
1866	 54.96	0	2099332..2100459	+	375	74312483	fliK	SSON_2001	-	flagellar hook-length control protein
1867	 52.69	0	2100564..2101028	+	154	74312484	fliL	SSON_2002	-	flagellar basal body-associated protein FliL
1868	 52.94	0	2101033..2102037	+	334	74312485	fliM	SSON_2003	-	flagellar motor switch protein FliM
1869	 54.83	0	2102034