IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1809	 46.86	-1	2042607..2043020	+	137	74312426	hns	SSON_1942	-	global DNA-binding transcriptional dual regulator H-NS
1810	 46.97	-1	2043164..2044072	-	302	74312427	galU	SSON_1943	-	UTP--glucose-1-phosphate uridylyltransferase subunit GalU
1811	 48.72	0	2044274..2045287	-	337	74312428	hnr	SSON_1944	-	response regulator of RpoS
1812	 50.37	0	2045379..2046323	-	314	74312429	ychK	SSON_1945	-	hypothetical protein
1813	 46.62	-1	2046397..2046855	+	152	74312430	ychJ	SSON_1946	-	hypothetical protein
1814	 47.33	-1	2046905..2047747	+	280	74312431	purU	SSON_1947	-	formyltetrahydrofolate deformylase
1815	 56.05	+1	2048354..2049031	-	225	74312432	narI	SSON_1949	-	nitrate reductase 1, cytochrome b(NR), gamma subunit
1816	 54.85	0	2049031..2049741	-	236	74312433	narJ	SSON_1950	-	nitrate reductase 1, delta subunit, assembly function
1817	 53.61	0	2049738..2051276	-	512	74312434	narH	SSON_1951	-	nitrate reductase 1, beta subunit
1818	 54.83	0	2051273..2055016	-	1247	74312435	narG	SSON_1952	-	nitrate reductase 1, alpha subunit
1819	 53.30	0	2055409..2056800	-	463	74312436	narK	SSON_1953	-	nitrite extrusion protein
1820	 38.36	-2	2056895..2057113	-	72	74312437	-	SSON_1954	-	hypothetical protein
1821	 53.26	0	2057139..2058935	+	598	74312438	narX	SSON_1955	-	nitrate/nitrite sensor protein NarX
1822	 51.46	0	2058928..2059578	+	216	74312439	narL	SSON_1956	-	transcriptional regulator NarL
1823	 51.52	0	2059579..2060832	-	417	74312440	ychP	SSON_1