version 1.0
Shigella sonnei Ss046, complete genome - 1..4825265 4219 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1803 46.25 -1 2032470..2033390 - 306 74312420 oppB SSON_1936 - oligopeptide transporter permease 1804 47.86 0 2033476..2035107 - 543 74312421 oppA SSON_1937 - oligopeptide transport periplasmic binding protein 1805 48.15 0 2035845..2036492 - 215 74312422 ychE SSON_1938 - hypothetical protein 1806 50.60 0 2036970..2039645 + 891 74312423 adhE SSON_1939 - bifunctional acetaldehyde-CoA/alcohol dehydrogenase 1807 53.90 0 2039700..2041046 - 448 74312424 - SSON_1940 - IS4 orf 1808 42.39 -2 2041385..2042002 - 205 74312425 tdk SSON_1941 - thymidine kinase 1809 46.86 -1 2042607..2043020 + 137 74312426 hns SSON_1942 - global DNA-binding transcriptional dual regulator H-NS 1810 46.97 -1 2043164..2044072 - 302 74312427 galU SSON_1943 - UTP--glucose-1-phosphate uridylyltransferase subunit GalU 1811 48.72 0 2044274..2045287 - 337 74312428 hnr SSON_1944 - response regulator of RpoS 1812 50.37 0 2045379..2046323 - 314 74312429 ychK SSON_1945 - hypothetical protein 1813 46.62 -1 2046397..2046855 + 152 74312430 ychJ SSON_1946 - hypothetical protein 1814 47.33 -1 2046905..2047747 + 280 74312431 purU SSON_1947 - formyltetrahydrofolate deformylase 1815 56.05 +1 2048354..2049031 - 225 74312432 narI SSON_1949 - nitrate reductase 1, cytochrome b(NR), gamma subunit 1816 54.85 0 2049031..2049741 - 236 74312433 narJ SSON_1950 - nitrate reductase 1, delta subunit, assembly function 1817 53.61 0 2049738..2051276 - 512 74312434 narH SSON_1951 - nitrate reductase 1, beta subunit 1818 54.83 0 2051273..2055016 - 1247 74312435 narG SSON_1952 - nitrate reductase 1, alpha subunit 1819 53.30 0 2055409..2056800 - 463 74312436 narK SSON_1953 - nitrite extrusion protein 1820 38.36 -2 2056895..2057113 - 72 74312437 - SSON_1954 - hypothetical protein 1821 53.26 0 2057139..2058935 + 598 74312438 narX SSON_1955 - nitrate/nitrite sensor protein NarX 1822 51.46 0 2058928..2059578 + 216 74312439 narL SSON_1956 - transcriptional regulator NarL 1823 51.52 0 2059579..2060832 - 417 74312440 ychP SSON_1957 - hypothetical protein 1824 51.69 0 2061158..2061511 + 117 74312441 ychN SSON_1958 - hypothetical protein 1825 54.67 0 2061555..2062271 - 238 74312442 chaC SSON_1959 - cation transport regulator 1826 45.45 -1 2062408..2062638 - 76 74312443 chaB SSON_1960 - cation transport regulator 1827 48.86 0 2062908..2064008 + 366 74312444 chaA SSON_1961 - calcium/sodium:proton antiporter 1828 53.33 0 2065455..2065589 + 44 74312445 - SSON_1962 - hypothetical protein 1829 51.70 0 2065738..2066592 - 284 74312446 kdsA SSON_1963 - 2-dehydro-3-deoxyphosphooctonate aldolase 1830 47.33 -1 2067440..2067832 - 130 74312447 - SSON_1965 - putative transcriptional regulator 1831 54.80 0 2067829..2068662 - 277 74312448 hemK SSON_1966 - N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1832 52.82 0 2068662..2069744 - 360 74312449 prfA SSON_1967 - peptide chain release factor 1 1833 53.94 0 2069786..2071042 - 418 74312450 hemA SSON_1968 - glutamyl-tRNA reductase 1834 51.28 0 2071256..2071879 + 207 74312451 lolB SSON_1969 - outer membrane lipoprotein LolB 1835 53.17 0 2071879..2072730 + 283 74312452 ychB SSON_1970 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1836 52.85 0 2072881..2073828 + 315 74312453 prsA SSON_1971 - ribose-phosphate pyrophosphokinase 1837 54.63 0 2073979..2075631 + 550 74312454 ychM SSON_1972 - putative sulfate transporter YchM 1838 53.05 0 2075686..2075964 - 92 74312455 ychH SSON_1973 - hypothetical protein 1839 49.74 0 2076241..2076825 + 194 74312456 pth SSON_1974 - peptidyl-tRNA hydrolase 1840 50.92 0 2076942..2078033 + 363 74312457 ychF SSON_1975 - translation-associated GTPase 1841 36.76 -2 2078327..2078530 - 67 74312458 - SSON_1976 - hypothetical protein 1842 54.37 0 2079184..2079687 + 167 74312459 - SSON_1977 - IS1 ORF 1843 52.10 0 2079751..2080464 - 237 74312460 - SSON_1978 - IS600 ORF2 1844 46.53 -1 2080605..2080907 - 100 74312461 - SSON_1979 - IS600 ORF1 1845 43.73 -1 2081218..2081496 + 92 74312462 - SSON_1980 - hypothetical protein 1846 49.39 0 2081511..2081921 + 136 74312463 fliS SSON_1981 - flagellar protein FliS 1847 51.64 0 2081921..2082286 + 121 74312464 fliT SSON_1982 - flagellar biosynthesis protein FliT 1848 49.80 0 2082364..2083851 + 495 74312465 amyA SSON_1983 - cytoplasmic alpha-amylase 1849 56.76 +1 2083885..2084298 - 137 74312466 yedD SSON_1984 - hypothetical protein 1850 55.14 0 2084485..2085690 + 401 74312467 yedE SSON_1985 - putative inner membrane protein 1851 47.86 0 2085687..2085920 + 77 74312468 yedF SSON_1986 - hypothetical protein 1852 51.49 0 2086027..2086698 + 223 74312469 yedK SSON_1987 - hypothetical protein 1853 51.61 0 2086738..2087886 - 382 74312470 - SSON_1988 - putative virulence protein 1854 54.37 0 2088805..2089308 - 167 74312471 - SSON_1989 - IS1 ORF 1855 52.46 0 2089704..2090069 + 121 74312472 - SSON_1990 - insertion sequence 2 OrfA protein 1856 54.64 0 2090027..2090932 + 301 161986518 - SSON_1991 - insertion element IS2 transposase InsD 1857 37.84 -2 2091452..2092249 - 265 74312474 ybcM SSON_1992 - putative ARAC-type regulatory protein 1858 44.38 -1 2092259..2092810 - 183 74312475 ybcL SSON_1993 - putative kinase inhibitor 1859 43.54 -1 2092979..2093311 - 110 74312476 emrE SSON_1994 - multidrug efflux protein 1860 53.97 0 2093645..2093959 - 104 74312477 fliE SSON_1995 - flagellar hook-basal body protein FliE 1861 54.67 0 2094175..2095833 + 552 74312478 fliF SSON_1996 - flagellar MS-ring protein 1862 55.72 0 2095826..2096821 + 331 74312479 fliG SSON_1997 - flagellar motor switch protein G 1863 57.21 +1 2096814..2097500 + 228 161986517 fliH SSON_1998 - flagellar assembly protein H 1864 58.01 +1 2097500..2098873 + 457 74312481 fliI SSON_1999 - flagellum-specific ATP synthase 1865 52.70 0 2098892..2099335 + 147 74312482 fliJ SSON_2000 - flagellar biosynthesis chaperone 1866 54.96 0 2099332..2100459 + 375 74312483 fliK SSON_2001 - flagellar hook-length control protein 1867 52.69 0 2100564..2101028 + 154 74312484 fliL SSON_2002 - flagellar basal body-associated protein FliL 1868 52.94 0 2101033..2102037 + 334 74312485 fliM SSON_2003 - flagellar motor switch protein FliM 1869 54.83 0 2102034..2102447 + 137 74312486 fliN SSON_2004 - flagellar motor switch protein FliN 1870 54.92 0 2102450..2102815 + 121 74312487 fliO SSON_2005 - flagellar biosynthesis protein FliO 1871 53.12 0 2102815..2103552 + 245 74312488 fliP SSON_2006 - flagellar biosynthesis protein FliP 1872 51.48 0 2103562..2103831 + 89 74312489 fliQ SSON_2007 - flagellar biosynthesis protein FliQ 1873 47.71 0 2103840..2104625 + 261 74312490 fliR SSON_2008 - flagellar biosynthesis protein FliR 1874 37.50 -2 2104910..2105533 + 207 74312491 rcsA SSON_2009 - positive regulator for ctr capsule biosynthesis 1875 51.32 0 2105577..2105765 - 62 74312492 dsrB SSON_2010 - hypothetical protein 1876 48.56 0 2105913..2106155 + 80 74312493 - SSON_2011 - hypothetical protein 1877 52.21 0 2106453..2107268 + 271 74312494 - SSON_2012 - mannosyl-3-phosphoglycerate phosphatase 1878 51.70 0 2107265..2108974 - 569 74312495 - SSON_2013 - hypothetical protein 1879 52.46 0 2109130..2109312 - 60 74312496 - SSON_2014 - hypothetical protein 1880 53.27 0 2109391..2110308 - 305 74312497 yedI SSON_2015 - hypothetical protein 1881 55.63 0 2111391..2111861 - 156 74312498 vsr SSON_2017 - DNA mismatch endonuclease 1882 51.94 0 2111842..2113260 - 472 74312499 dcm SSON_2018 - DNA cytosine methylase 1883 54.19 0 2113327..2113983 - 218 74312500 yedJ SSON_2019 - hypothetical protein 1884 49.48 0 2114023..2114406 - 127 74312501 - SSON_2020 - hypothetical protein 1885 54.37 0 2116005..2116508 + 167 74312502 - SSON_2022 - IS1 ORF 1886 48.83 0 2117486..2118337 + 283 74312503 yedU SSON_2023 - chaperone protein HchA 1887 53.41 0 2118353..2118631 + 92 74312504 - SSON_2024 - IS2 orf1 1888 55.19 0 2118589..2119494 + 301 161986516 - SSON_2025 - insertion element IS2 transposase InsD 1889 39.51 -2 2119522..2120880 - 452 74312506 yedV SSON_2026 - putative 2-component sensor protein 1890 44.20 -1 2120880..2121551 - 223 161986515 yedW SSON_2027 - transcriptional regulatory protein YedW 1891 55.08 0 2122002..2122907 + 301 161986514 - SSON_2028 - insertion element IS2 transposase InsD 1892 42.03 -2 2123020..2123433 + 137 74312509 yedX SSON_2029 - hypothetical protein 1893 52.34 0 2123542..2124546 + 334 74312510 - SSON_2030 - putative sulfite oxidase subunit YedY 1894 48.27 0 2124547..2125182 + 211 74312511 - SSON_2031 - putative sulfite oxidase subunit YedZ 1895 37.94 -2 2125439..2126089 + 216 74312512 - SSON_2032 - hypothetical protein 1896 45.88 -1 2127676..2128512 + 278 74312513 - SSON_2035 - hypothetical protein 1897 54.52 0 2134963..2135802 - 279 74312514 - SSON_2038 - IS911 ORF2 1898 52.91 0 2137314..2138345 + 343 74312515 - SSON_2039 - IS630 orf 1899 40.98 -2 2138736..2139062 - 108 74312516 - SSON_2040 - hypothetical protein 1900 54.37 0 2141363..2141866 + 167 74312517 - SSON_2041 - IS1 ORF 1901 48.26 0 2142001..2142951 + 316 74312518 cbl SSON_2042 - transcriptional regulator Cbl 1902 48.45 0 2143072..2144712 + 546 74312519 yeeO SSON_2044 - hypothetical protein 51.65 MEAN 4.20 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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