IslandPathversion 1.0

IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1796	 46.53	-1	2025409..2025711	-	100	74312413	-	SSON_1929	-	IS600 ORF1
1797	 42.34	-2	2026020..2027273	+	417	74312414	kch	SSON_1930	-	voltage-gated potassium channel
1798	 51.61	0	2027644..2029104	+	486	74312415	cls	SSON_1931	-	cardiolipin synthetase
1799	 48.18	0	2029139..2029468	+	109	161986519	-	SSON_1932	-	dsDNA-mimic protein
1800	 52.24	0	2029521..2030525	-	334	74312417	oppF	SSON_1933	-	ATP-binding protein of oligopeptide ABC transport system
1801	 51.38	0	2030522..2031535	-	337	74312418	oppD	SSON_1934	-	oligopeptide transporter ATP-binding component
1802	 52.15	0	2031547..2032455	-	302	74312419	oppC	SSON_1935	-	oligopeptide transport permease protein-like protein
1803	 46.25	-1	2032470..2033390	-	306	74312420	oppB	SSON_1936	-	oligopeptide transporter permease
1804	 47.86	0	2033476..2035107	-	543	74312421	oppA	SSON_1937	-	oligopeptide transport periplasmic binding protein
1805	 48.15	0	2035845..2036492	-	215	74312422	ychE	SSON_1938	-	hypothetical protein
1806	 50.60	0	2036970..2039645	+	891	74312423	adhE	SSON_1939	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
1807	 53.90	0	2039700..2041046	-	448	74312424	-	SSON_1940	-	IS4 orf
1808	 42.39	-2	2041385..2042002	-	205	74312425	tdk	SSON_1941	-	thymidine kinase
1809	 46.86	-1	2042607..2043020	+	137	74312426	hns	SSON_1942	-	global DNA-binding transcriptional dual regulator H-NS
1810	 46.97	-1	2043164..2044072	-	302	74312427	galU	SSON_1943	-	UTP--glucose-1-phosphate u