IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1789	 38.26	-2	2017428..2018138	-	236	74312406	-	SSON_1922	-	hypothetical protein
1790	 38.43	-2	2018654..2018869	-	71	74312407	-	SSON_1923	-	hypothetical protein
1791	 54.37	0	2018914..2019417	-	167	74312408	-	SSON_1924	-	IS1 ORF
1792	 40.68	-2	2020687..2021244	-	185	74312409	-	SSON_1925	-	hypothetical protein
1793	 43.84	-1	2022807..2023358	-	183	74312410	-	SSON_1926	-	putative resolvase
1794	 48.82	0	2024157..2024453	+	98	161986520	yciI	SSON_1927	-	YciI-like protein
1795	 52.10	0	2024555..2025268	-	237	74312412	-	SSON_1928	-	IS600 ORF2
1796	 46.53	-1	2025409..2025711	-	100	74312413	-	SSON_1929	-	IS600 ORF1
1797	 42.34	-2	2026020..2027273	+	417	74312414	kch	SSON_1930	-	voltage-gated potassium channel
1798	 51.61	0	2027644..2029104	+	486	74312415	cls	SSON_1931	-	cardiolipin synthetase
1799	 48.18	0	2029139..2029468	+	109	161986519	-	SSON_1932	-	dsDNA-mimic protein
1800	 52.24	0	2029521..2030525	-	334	74312417	oppF	SSON_1933	-	ATP-binding protein of oligopeptide ABC transport system
1801	 51.38	0	2030522..2031535	-	337	74312418	oppD	SSON_1934	-	oligopeptide transporter ATP-binding component
1802	 52.15	0	2031547..2032455	-	302	74312419	oppC	SSON_1935	-	oligopeptide transport permease protein-like protein
1803	 46.25	-1	2032470..2033390	-	306	74312420	oppB	SSON_1936	-	oligopeptide transporter permease
1804	 47.86	0	2033476..2035107	-	543