IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1771	 51.28	0	2000469..2000624	-	51	74312388	relF	SSON_1904	-	polypeptide destructive to membrane potential
1772	 43.29	-1	2001435..2001665	-	76	74312389	-	SSON_1905	-	unknown protein encoded within prophage
1773	 52.10	0	2001677..2002390	-	237	74312390	-	SSON_1906	-	IS600 ORF2
1774	 46.20	-1	2002531..2002833	-	100	74312391	-	SSON_1907	-	IS600 ORF1
1775	 54.37	0	2003609..2004112	+	167	74312392	-	SSON_1908	-	IS1 ORF
1776	 38.03	-2	2004171..2004383	+	70	74312393	-	SSON_1909	-	unknown protein encoded within prophage
1777	 50.08	0	2005055..2005693	-	212	74312394	yciD	SSON_1910	-	outer membrane protein W
1778	 49.33	0	2006050..2006793	+	247	74312395	yciC	SSON_1911	-	hypothetical protein
1779	 46.48	-1	2006823..2007362	+	179	74312396	yciB	SSON_1912	-	intracellular septation protein A
1780	 48.62	0	2007467..2007865	+	132	74312397	yciA	SSON_1913	-	acyl-CoA thioester hydrolase
1781	 55.00	0	2007905..2008624	-	239	74312398	tonB	SSON_1914	-	transport protein TonB
1782	 44.44	-1	2008715..2010235	+	506	74312399	-	SSON_1915	-	hypothetical protein
1783	 55.19	0	2011066..2011971	+	301	161986521	-	SSON_1916	-	insertion element IS2 transposase InsD
1784	 39.54	-2	2012548..2012982	-	144	74312401	-	SSON_1917	-	hypothetical protein
1785	 52.10	0	2012994..2013707	-	237	74312402	-	SSON_1918	-	IS600 ORF2
1786	 46.20	-1	2013848..2014150	-	100