IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1760	 46.20	-1	1989342..1989644	+	100	74312377	-	SSON_1890	-	IS600 ORF1
1761	 51.96	0	1989785..1990498	+	237	74312378	-	SSON_1891	-	IS600 ORF2
1762	 47.30	-1	1990932..1991246	-	104	74312379	-	SSON_1892	-	hypothetical protein
1763	 53.51	0	1991617..1993470	-	617	74312380	-	SSON_1893	-	unknown protein encoded within prophage
1764	 46.20	-1	1994069..1994371	+	100	74312381	-	SSON_1894	-	IS600 ORF1
1765	 51.82	0	1994512..1995225	+	237	74312382	-	SSON_1895	-	IS600 ORF2
1766	 53.16	0	1996003..1997061	-	352	74312383	-	SSON_1899	-	putative DNA adenine methyltransferase encoded by prophage
1767	 50.51	0	1997212..1997409	-	65	74312384	-	SSON_1900	-	putative bacteriophage protein
1768	 49.15	0	1997634..1998455	-	273	74312385	-	SSON_1901	-	antitermination protein Q-like protein
1769	 50.92	0	1998452..1998832	-	126	74312386	-	SSON_1902	-	putative endonuclease of cryptic prophage
1770	 51.94	0	1998833..1999891	-	352	74312387	-	SSON_1903	-	hypothetical protein
1771	 51.28	0	2000469..2000624	-	51	74312388	relF	SSON_1904	-	polypeptide destructive to membrane potential
1772	 43.29	-1	2001435..2001665	-	76	74312389	-	SSON_1905	-	unknown protein encoded within prophage
1773	 52.10	0	2001677..2002390	-	237	74312390	-	SSON_1906	-	IS600 ORF2
1774	 46.20	-1	2002531..2002833	-	100	74312391	-	SSON_1907	-	IS600 ORF1
1775	 54.37	0	2003609..2004112	+	167