version 1.0
Shigella sonnei Ss046, complete genome - 1..4825265 4219 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1758 42.51 -2 1987898..1988431 + 177 74312375 - SSON_1888 - putative tail fiber assembly protein 1759 44.89 -1 1988460..1988987 - 175 74312376 - SSON_1889 - putative tail fiber assembly protein 1760 46.20 -1 1989342..1989644 + 100 74312377 - SSON_1890 - IS600 ORF1 1761 51.96 0 1989785..1990498 + 237 74312378 - SSON_1891 - IS600 ORF2 1762 47.30 -1 1990932..1991246 - 104 74312379 - SSON_1892 - hypothetical protein 1763 53.51 0 1991617..1993470 - 617 74312380 - SSON_1893 - unknown protein encoded within prophage 1764 46.20 -1 1994069..1994371 + 100 74312381 - SSON_1894 - IS600 ORF1 1765 51.82 0 1994512..1995225 + 237 74312382 - SSON_1895 - IS600 ORF2 1766 53.16 0 1996003..1997061 - 352 74312383 - SSON_1899 - putative DNA adenine methyltransferase encoded by prophage 1767 50.51 0 1997212..1997409 - 65 74312384 - SSON_1900 - putative bacteriophage protein 1768 49.15 0 1997634..1998455 - 273 74312385 - SSON_1901 - antitermination protein Q-like protein 1769 50.92 0 1998452..1998832 - 126 74312386 - SSON_1902 - putative endonuclease of cryptic prophage 1770 51.94 0 1998833..1999891 - 352 74312387 - SSON_1903 - hypothetical protein 1771 51.28 0 2000469..2000624 - 51 74312388 relF SSON_1904 - polypeptide destructive to membrane potential 1772 43.29 -1 2001435..2001665 - 76 74312389 - SSON_1905 - unknown protein encoded within prophage 1773 52.10 0 2001677..2002390 - 237 74312390 - SSON_1906 - IS600 ORF2 1774 46.20 -1 2002531..2002833 - 100 74312391 - SSON_1907 - IS600 ORF1 1775 54.37 0 2003609..2004112 + 167 74312392 - SSON_1908 - IS1 ORF 1776 38.03 -2 2004171..2004383 + 70 74312393 - SSON_1909 - unknown protein encoded within prophage 1777 50.08 0 2005055..2005693 - 212 74312394 yciD SSON_1910 - outer membrane protein W 1778 49.33 0 2006050..2006793 + 247 74312395 yciC SSON_1911 - hypothetical protein 1779 46.48 -1 2006823..2007362 + 179 74312396 yciB SSON_1912 - intracellular septation protein A 1780 48.62 0 2007467..2007865 + 132 74312397 yciA SSON_1913 - acyl-CoA thioester hydrolase 1781 55.00 0 2007905..2008624 - 239 74312398 tonB SSON_1914 - transport protein TonB 1782 44.44 -1 2008715..2010235 + 506 74312399 - SSON_1915 - hypothetical protein 1783 55.19 0 2011066..2011971 + 301 161986521 - SSON_1916 - insertion element IS2 transposase InsD 1784 39.54 -2 2012548..2012982 - 144 74312401 - SSON_1917 - hypothetical protein 1785 52.10 0 2012994..2013707 - 237 74312402 - SSON_1918 - IS600 ORF2 1786 46.20 -1 2013848..2014150 - 100 74312403 - SSON_1919 - IS600 ORF1 1787 52.91 0 2014725..2015756 + 343 74312404 - SSON_1920 - IS630 orf 1788 38.42 -2 2015762..2017039 - 425 74312405 - SSON_1921 - hypothetical protein 1789 38.26 -2 2017428..2018138 - 236 74312406 - SSON_1922 - hypothetical protein 1790 38.43 -2 2018654..2018869 - 71 74312407 - SSON_1923 - hypothetical protein 1791 54.37 0 2018914..2019417 - 167 74312408 - SSON_1924 - IS1 ORF 1792 40.68 -2 2020687..2021244 - 185 74312409 - SSON_1925 - hypothetical protein 1793 43.84 -1 2022807..2023358 - 183 74312410 - SSON_1926 - putative resolvase 1794 48.82 0 2024157..2024453 + 98 161986520 yciI SSON_1927 - YciI-like protein 1795 52.10 0 2024555..2025268 - 237 74312412 - SSON_1928 - IS600 ORF2 1796 46.53 -1 2025409..2025711 - 100 74312413 - SSON_1929 - IS600 ORF1 1797 42.34 -2 2026020..2027273 + 417 74312414 kch SSON_1930 - voltage-gated potassium channel 1798 51.61 0 2027644..2029104 + 486 74312415 cls SSON_1931 - cardiolipin synthetase 1799 48.18 0 2029139..2029468 + 109 161986519 - SSON_1932 - dsDNA-mimic protein 1800 52.24 0 2029521..2030525 - 334 74312417 oppF SSON_1933 - ATP-binding protein of oligopeptide ABC transport system 1801 51.38 0 2030522..2031535 - 337 74312418 oppD SSON_1934 - oligopeptide transporter ATP-binding component 1802 52.15 0 2031547..2032455 - 302 74312419 oppC SSON_1935 - oligopeptide transport permease protein-like protein 1803 46.25 -1 2032470..2033390 - 306 74312420 oppB SSON_1936 - oligopeptide transporter permease 1804 47.86 0 2033476..2035107 - 543 74312421 oppA SSON_1937 - oligopeptide transport periplasmic binding protein 1805 48.15 0 2035845..2036492 - 215 74312422 ychE SSON_1938 - hypothetical protein 1806 50.60 0 2036970..2039645 + 891 74312423 adhE SSON_1939 - bifunctional acetaldehyde-CoA/alcohol dehydrogenase 1807 53.90 0 2039700..2041046 - 448 74312424 - SSON_1940 - IS4 orf 1808 42.39 -2 2041385..2042002 - 205 74312425 tdk SSON_1941 - thymidine kinase 1809 46.86 -1 2042607..2043020 + 137 74312426 hns SSON_1942 - global DNA-binding transcriptional dual regulator H-NS 1810 46.97 -1 2043164..2044072 - 302 74312427 galU SSON_1943 - UTP--glucose-1-phosphate uridylyltransferase subunit GalU 1811 48.72 0 2044274..2045287 - 337 74312428 hnr SSON_1944 - response regulator of RpoS 1812 50.37 0 2045379..2046323 - 314 74312429 ychK SSON_1945 - hypothetical protein 1813 46.62 -1 2046397..2046855 + 152 74312430 ychJ SSON_1946 - hypothetical protein 1814 47.33 -1 2046905..2047747 + 280 74312431 purU SSON_1947 - formyltetrahydrofolate deformylase 1815 56.05 +1 2048354..2049031 - 225 74312432 narI SSON_1949 - nitrate reductase 1, cytochrome b(NR), gamma subunit 1816 54.85 0 2049031..2049741 - 236 74312433 narJ SSON_1950 - nitrate reductase 1, delta subunit, assembly function 1817 53.61 0 2049738..2051276 - 512 74312434 narH SSON_1951 - nitrate reductase 1, beta subunit 1818 54.83 0 2051273..2055016 - 1247 74312435 narG SSON_1952 - nitrate reductase 1, alpha subunit 1819 53.30 0 2055409..2056800 - 463 74312436 narK SSON_1953 - nitrite extrusion protein 1820 38.36 -2 2056895..2057113 - 72 74312437 - SSON_1954 - hypothetical protein 1821 53.26 0 2057139..2058935 + 598 74312438 narX SSON_1955 - nitrate/nitrite sensor protein NarX 1822 51.46 0 2058928..2059578 + 216 74312439 narL SSON_1956 - transcriptional regulator NarL 1823 51.52 0 2059579..2060832 - 417 74312440 ychP SSON_1957 - hypothetical protein 1824 51.69 0 2061158..2061511 + 117 74312441 ychN SSON_1958 - hypothetical protein 1825 54.67 0 2061555..2062271 - 238 74312442 chaC SSON_1959 - cation transport regulator 1826 45.45 -1 2062408..2062638 - 76 74312443 chaB SSON_1960 - cation transport regulator 1827 48.86 0 2062908..2064008 + 366 74312444 chaA SSON_1961 - calcium/sodium:proton antiporter 1828 53.33 0 2065455..2065589 + 44 74312445 - SSON_1962 - hypothetical protein 1829 51.70 0 2065738..2066592 - 284 74312446 kdsA SSON_1963 - 2-dehydro-3-deoxyphosphooctonate aldolase 1830 47.33 -1 2067440..2067832 - 130 74312447 - SSON_1965 - putative transcriptional regulator 1831 54.80 0 2067829..2068662 - 277 74312448 hemK SSON_1966 - N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1832 52.82 0 2068662..2069744 - 360 74312449 prfA SSON_1967 - peptide chain release factor 1 1833 53.94 0 2069786..2071042 - 418 74312450 hemA SSON_1968 - glutamyl-tRNA reductase 1834 51.28 0 2071256..2071879 + 207 74312451 lolB SSON_1969 - outer membrane lipoprotein LolB 1835 53.17 0 2071879..2072730 + 283 74312452 ychB SSON_1970 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1836 52.85 0 2072881..2073828 + 315 74312453 prsA SSON_1971 - ribose-phosphate pyrophosphokinase 1837 54.63 0 2073979..2075631 + 550 74312454 ychM SSON_1972 - putative sulfate transporter YchM 1838 53.05 0 2075686..2075964 - 92 74312455 ychH SSON_1973 - hypothetical protein 1839 49.74 0 2076241..2076825 + 194 74312456 pth SSON_1974 - peptidyl-tRNA hydrolase 1840 50.92 0 2076942..2078033 + 363 74312457 ychF SSON_1975 - translation-associated GTPase 1841 36.76 -2 2078327..2078530 - 67 74312458 - SSON_1976 - hypothetical protein 1842 54.37 0 2079184..2079687 + 167 74312459 - SSON_1977 - IS1 ORF 1843 52.10 0 2079751..2080464 - 237 74312460 - SSON_1978 - IS600 ORF2 1844 46.53 -1 2080605..2080907 - 100 74312461 - SSON_1979 - IS600 ORF1 1845 43.73 -1 2081218..2081496 + 92 74312462 - SSON_1980 - hypothetical protein 1846 49.39 0 2081511..2081921 + 136 74312463 fliS SSON_1981 - flagellar protein FliS 1847 51.64 0 2081921..2082286 + 121 74312464 fliT SSON_1982 - flagellar biosynthesis protein FliT 1848 49.80 0 2082364..2083851 + 495 74312465 amyA SSON_1983 - cytoplasmic alpha-amylase 1849 56.76 +1 2083885..2084298 - 137 74312466 yedD SSON_1984 - hypothetical protein 1850 55.14 0 2084485..2085690 + 401 74312467 yedE SSON_1985 - putative inner membrane protein 1851 47.86 0 2085687..2085920 + 77 74312468 yedF SSON_1986 - hypothetical protein 1852 51.49 0 2086027..2086698 + 223 74312469 yedK SSON_1987 - hypothetical protein 1853 51.61 0 2086738..2087886 - 382 74312470 - SSON_1988 - putative virulence protein 1854 54.37 0 2088805..2089308 - 167 74312471 - SSON_1989 - IS1 ORF 1855 52.46 0 2089704..2090069 + 121 74312472 - SSON_1990 - insertion sequence 2 OrfA protein 1856 54.64 0 2090027..2090932 + 301 161986518 - SSON_1991 - insertion element IS2 transposase InsD 1857 37.84 -2 2091452..2092249 - 265 74312474 ybcM SSON_1992 - putative ARAC-type regulatory protein 51.65 MEAN 4.20 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0