IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1753	 53.66	0	1982308..1983114	+	268	74312370	trpA	SSON_1883	-	tryptophan synthase subunit alpha
1754	 54.37	0	1983467..1983970	+	167	74312371	-	SSON_1884	-	IS1 ORF
1755	 44.44	-1	1984562..1985119	+	185	74312372	-	SSON_1885	-	hypothetical protein
1756	 41.40	-2	1985869..1986525	+	218	74312373	-	SSON_1886	-	unknown protein encoded within prophage
1757	 43.14	-2	1987134..1987745	+	203	74312374	-	SSON_1887	-	putative bacteriophage tail protein
1758	 42.51	-2	1987898..1988431	+	177	74312375	-	SSON_1888	-	putative tail fiber assembly protein
1759	 44.89	-1	1988460..1988987	-	175	74312376	-	SSON_1889	-	putative tail fiber assembly protein
1760	 46.20	-1	1989342..1989644	+	100	74312377	-	SSON_1890	-	IS600 ORF1
1761	 51.96	0	1989785..1990498	+	237	74312378	-	SSON_1891	-	IS600 ORF2
1762	 47.30	-1	1990932..1991246	-	104	74312379	-	SSON_1892	-	hypothetical protein
1763	 53.51	0	1991617..1993470	-	617	74312380	-	SSON_1893	-	unknown protein encoded within prophage
1764	 46.20	-1	1994069..1994371	+	100	74312381	-	SSON_1894	-	IS600 ORF1
1765	 51.82	0	1994512..1995225	+	237	74312382	-	SSON_1895	-	IS600 ORF2
1766	 53.16	0	1996003..1997061	-	352	74312383	-	SSON_1899	-	putative DNA adenine methyltransferase encoded by prophage
1767	 50.51	0	1997212..1997409	-	65	74312384	-	SSON_1900	-	putative bacteriophage protein
1768	 49.15	0	1997634..1998455	-	273