IslandPathversion 1.0

IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
128	 55.42	0	147811..150201	-	796	74310742	gcd	SSON_0132	-	glucose dehydrogenase
129	 50.84	0	150407..150943	+	178	161986596	hpt	SSON_0133	-	hypoxanthine phosphoribosyltransferase
130	 50.68	0	150984..151646	-	220	74310744	yadF	SSON_0134	-	carbonic anhydrase
131	 49.19	0	151755..152681	+	308	74310745	yadG	SSON_0135	-	putative ATP-binding component of a transport system
132	 50.71	0	152678..153448	+	256	74310746	yadH	SSON_0136	-	hypothetical protein
133	 49.66	0	153553..153993	+	146	74310747	yadI	SSON_0137	-	putative PTS system enzyme IIB component
134	 49.76	0	154057..155286	+	409	74310748	yadE	SSON_0138	-	hypothetical protein
135	 52.49	0	155290..155670	-	126	74310749	panD	SSON_0139	-	aspartate alpha-decarboxylase
136	 49.16	0	155887..156840	+	317	74310750	yadD	SSON_0140	-	hypothetical protein
137	 53.05	0	157132..157983	-	283	74310751	panC	SSON_0141	-	pantoate--beta-alanine ligase
138	 54.72	0	157995..158789	-	264	74310752	panB	SSON_0142	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
139	 54.37	0	159623..160126	+	167	74310753	-	SSON_0143	-	IS1 ORF
140	 55.08	0	160653..161558	+	301	161986595	-	SSON_0144	-	insertion element IS2 transposase InsD
141	 42.04	-2	162339..162935	-	198	74310755	yadK	SSON_0145	-	putative fimbrial protein
142	 43.95	-1	162962..163564	-	200	74310756	yadL	SSON_0146	-	putative fimbrial protein
143	 55.19	0	164059..164964	-	301	161986594	-	SSON_0147	-	insertion element IS2 transposase InsD
144	 53.01	0	164922..165287	-	121	161986593	-	SSON_0148	-	insertion sequence 2 OrfA protein
145	 52.81	0	165337..166368	-	343	74310759	-	SSON_0149	-	IS630 orf
146	 54.37	0	167677..168180	-	167	74310760	-	SSON_0150	-	IS1 ORF
147	 44.26	-1	169651..170391	-	246	74310761	ecpD	SSON_0152	-	putative chaperone protein EcpD
148	 44.10	-1	170496..171080	-	194	74310762	yadN	SSON_0153	-	putative fimbrial-like protein
149	 51.67	0	171450..171929	-	159	74310763	folK	SSON_0154	-	2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase
150	 55.81	0	171926..173344	-	472	161986592	pcnB	SSON_0155	-	poly(A) polymerase I
151	 53.51	0	173383..174279	-	298	161986591	yadB	SSON_0156	-	glutamyl-Q tRNA(Asp) synthetase
152	 52.63	0	174346..174801	-	151	74310766	dksA	SSON_0157	-	DnaK transcriptional regulator DksA
153	 49.22	0	174979..175683	-	234	74310767	sfsA	SSON_0158	-	sugar fermentation stimulation protein A
154	 56.11	+1	175698..176237	-	179	74310768	yadP	SSON_0159	-	hypothetical protein
155	 56.28	+1	176257..178731	+	824	74310769	hrpB	SSON_0160	-	ATP-dependent RNA helicase HrpB
156	 55.42	0	178927..181461	+	844	74310770	mrcB	SSON_0161	-	penicillin-binding protein 1b
157	 45.80	-1	181681..183870	+	729	74310771	fhuA	SSON_0162	-	ferrichrome outer membrane transporter
158	 56.27	+1	183921..184718	+	265	74310772	fhuC	SSON_0163	-	iron-hydroxamate transporter ATP-binding subunit
159	 54.66	0	184718..185608	+	296	74310773	fhuD	SSON_0164	-	iron-hydroxamate transporter substrate-binding subunit
160	 59.86	+1	185605..187587	+	660	74310774	fhuB	SSON_0165	-	iron-hydroxamate transporter permease subunit
161	 55.58	0	187745..189025	-	426	74310775	hemL	SSON_0166	-	glutamate-1-semialdehyde aminotransferase
162	 53.87	0	189250..190671	+	473	74310776	yadQ	SSON_0167	-	chloride channel protein
163	 51.01	0	190753..191097	+	114	74310777	yadR	SSON_0168	-	iron-sulfur cluster insertion protein ErpA
164	 53.37	0	191144..191767	-	207	74310778	yadS	SSON_0169	-	hypothetical protein
165	 52.68	0	191805..192605	-	266	74310779	yadT	SSON_0170	-	vitamin B12-transporter protein BtuF
166	 52.93	0	192598..193296	-	232	74310780	pfs	SSON_0171	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
167	 54.37	0	194463..194966	+	167	74310781	-	SSON_0173	-	IS1 ORF
168	 54.18	0	195804..197228	+	474	74310782	htrA	SSON_0174	-	serine endoprotease
169	 52.68	0	197383..198540	+	385	161986590	yaeG	SSON_0175	-	carbohydrate diacid transcriptional activator CdaR
170	 44.70	-1	198629..199015	-	128	74310784	yaeH	SSON_0176	-	hypothetical protein
171	 51.26	0	199177..199968	-	263	161986589	yaeI	SSON_0177	-	phosphodiesterase YaeI
172	 52.97	0	200044..200868	-	274	74310786	dapD	SSON_0178	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
173	 53.39	0	200899..203571	-	890	74310787	glnD	SSON_0179	-	PII uridylyl-transferase
174	 50.94	0	203633..204427	-	264	74310788	map	SSON_0180	-	methionine aminopeptidase
175	 51.24	0	204795..205520	+	241	74310789	rpsB	SSON_0181	-	30S ribosomal protein S2
176	 50.00	0	205778..206629	+	283	74310790	tsf	SSON_0182	-	elongation factor Ts
177	 52.75	0	206776..207501	+	241	74310791	pyrH	SSON_0183	-	uridylate kinase
178	 50.90	0	207793..208350	+	185	74310792	frr	SSON_0184	-	ribosome recycling factor
179	 52.38	0	208442..209638	+	398	74310793	yaeM	SSON_0185	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
180	 49.74	0	209824..210585	+	253	74310794	yaeS	SSON_0186	-	undecaprenyl pyrophosphate synthase
181	 50.82	0	210598..211455	+	285	161986588	cdsA	SSON_0187	-	CDP-diglyceride synthase
182	 50.78	0	211467..212819	+	450	74310796	yaeL	SSON_0188	-	zinc metallopeptidase
183	 50.47	0	212849..215281	+	810	74310797	yaeT	SSON_0189	-	outer membrane protein assembly factor YaeT
184	 50.21	0	215403..215888	+	161	74310798	hlpA	SSON_0190	-	periplasmic chaperone
185	 53.02	0	215892..216917	+	341	74310799	lpxD	SSON_0191	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
186	 50.44	0	217022..217477	+	151	74310800	fabZ	SSON_0192	-	(3R)-hydroxymyristoyl-ACP dehydratase
187	 53.11	0	217481..218269	+	262	74310801	lpxA	SSON_0193	-	UDP-N-acetylglucosamine acyltransferase
188	 53.70	0	218269..219417	+	382	74310802	lpxB	SSON_0194	-	lipid-A-disaccharide synthase
189	 57.29	+1	219414..220010	+	198	74310803	rnhB	SSON_0195	-	ribonuclease HII
190	 55.21	0	220047..223529	+	1160	74310804	dnaE	SSON_0196	-	DNA polymerase III subunit alpha
191	 52.60	0	223542..224501	+	319	74310805	accA	SSON_0197	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
192	 53.90	0	224550..225896	-	448	74310806	-	SSON_0198	-	IS4 orf
193	 51.17	0	226039..228180	+	713	74310807	ldcC	SSON_0199	-	lysine decarboxylase 2, constitutive
194	 51.54	0	228237..228626	+	129	161986587	yaeR	SSON_0200	-	hypothetical protein
195	 57.89	+1	228691..229989	+	432	74310809	tilS	SSON_0201	-	tRNA(Ile)-lysidine synthetase
196	 47.13	-1	230038..230298	-	86	74310810	yaeO	SSON_0202	-	Rho-binding antiterminator
197	 50.75	0	230285..230485	-	66	74310811	yaeP	SSON_0203	-	hypothetical protein
198	 52.56	0	230651..231196	+	181	74310812	yaeQ	SSON_0204	-	hypothetical protein
199	 51.62	0	231628..232338	+	236	74310813	cutF	SSON_0206	-	lipoprotein involved with copper homeostasis and adhesion
200	 49.33	0	232493..233317	-	274	161986586	yaeF	SSON_0207	-	hypothetical protein
201	 54.45	0	233370..235088	-	572	74310815	proS	SSON_0208	-	prolyl-tRNA synthetase
202	 54.94	0	235199..235906	-	235	74310816	yaeB	SSON_0209	-	hypothetical protein
203	 53.83	0	235903..236307	-	134	74310817	rcsF	SSON_0210	-	outer membrane lipoprotein
204	 48.77	0	236425..237240	-	271	74310818	metQ	SSON_0211	-	DL-methionine transporter substrate-binding subunit
205	 51.99	0	237280..237933	-	217	74310819	yaeE	SSON_0212	-	DL-methionine transporter permease subunit
206	 52.42	0	237926..238957	-	343	74310820	metN	SSON_0213	-	DL-methionine transporter ATP-binding subunit
207	 50.00	0	239145..239720	+	191	74310821	yaeD	SSON_0214	-	D,D-heptose 1,7-bisphosphate phosphatase
208	 45.77	-1	245604..246407	+	267	74310822	dkgB	SSON_0221	-	2,5-diketo-D-gluconate reductase B
209	 49.51	0	246404..247318	-	304	74310823	yafC	SSON_0222	-	putative transcriptional regulator LYSR-type
210	 52.68	0	247559..248359	+	266	74310824	yafD	SSON_0223	-	hypothetical protein
211	 49.68	0	248363..248986	+	207	74310825	yafE	SSON_0224	-	putative biotin synthesis protein
212	 52.02	0	249035..250393	-	452	74310826	dniR	SSON_0225	-	membrane-bound lytic murein transglycosylase D
213	 40.21	-2	250465..251220	-	251	74310827	gloB	SSON_0226	-	hydroxyacylglutathione hydrolase
214	 49.26	0	251236..251976	+	246	74310828	yafS	SSON_0227	-	hypothetical protein
215	 50.43	0	251973..252440	-	155	74310829	rnhA	SSON_0228	-	ribonuclease H
216	 50.68	0	252505..253236	+	243	74310830	dnaQ	SSON_0229	-	DNA polymerase III subunit epsilon
217	 41.60	-2	253775..254560	+	261	74310831	yafT	SSON_0231	-	putative aminopeptidase
218	 39.53	-2	255186..255524	-	112	74310832	yafU	SSON_0232	-	hypothetical protein
219	 38.51	-2	256165..256647	-	160	74310833	-	SSON_0233	-	Hcp-like protein
220	 56.17	+1	256671..258023	-	450	74310834	-	SSON_0234	-	hypothetical protein
221	 52.98	0	258034..258720	-	228	74310835	-	SSON_0235	-	hypothetical protein
222	 56.29	+1	258757..259932	-	391	74310836	-	SSON_0236	-	hypothetical protein
223	 55.19	0	259945..260850	-	301	161986585	-	SSON_0237	-	insertion element IS2 transposase InsD
224	 53.01	0	260808..261173	-	121	74310838	-	SSON_0238	-	insertion sequence 2 OrfA protein
225	 57.92	+1	261215..262894	-	559	74310839	-	SSON_0239	-	hypothetical protein
226	 57.75	+1	262913..264325	-	470	74310840	-	SSON_0240	-	hypothetical protein
227	 63.78	+2	264330..265022	-	230	74310841	-	SSON_0241	-	hypothetical protein
51.65	MEAN

4.20	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.