IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
124	 46.29	-1	143919..144713	-	264	74310738	speD	SSON_0128	-	S-adenosylmethionine decarboxylase
125	 50.63	0	144729..145595	-	288	74310739	speE	SSON_0129	-	spermidine synthase
126	 49.89	0	145701..146171	-	156	74310740	yacC	SSON_0130	-	hypothetical protein
127	 54.16	0	146214..147764	+	516	74310741	yacK	SSON_0131	-	multicopper oxidase
128	 55.42	0	147811..150201	-	796	74310742	gcd	SSON_0132	-	glucose dehydrogenase
129	 50.84	0	150407..150943	+	178	161986596	hpt	SSON_0133	-	hypoxanthine phosphoribosyltransferase
130	 50.68	0	150984..151646	-	220	74310744	yadF	SSON_0134	-	carbonic anhydrase
131	 49.19	0	151755..152681	+	308	74310745	yadG	SSON_0135	-	putative ATP-binding component of a transport system
132	 50.71	0	152678..153448	+	256	74310746	yadH	SSON_0136	-	hypothetical protein
133	 49.66	0	153553..153993	+	146	74310747	yadI	SSON_0137	-	putative PTS system enzyme IIB component
134	 49.76	0	154057..155286	+	409	74310748	yadE	SSON_0138	-	hypothetical protein
135	 52.49	0	155290..155670	-	126	74310749	panD	SSON_0139	-	aspartate alpha-decarboxylase
136	 49.16	0	155887..156840	+	317	74310750	yadD	SSON_0140	-	hypothetical protein
137	 53.05	0	157132..157983	-	283	74310751	panC	SSON_0141	-	pantoate--beta-alanine ligase
138	 54.72	0	157995..158789	-	264	74310752	panB	SSON_0142	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
139	 54.37	0	159623..160126	+	167