IslandPathversion 1.0

IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
115	 52.40	0	128509..129363	+	284	74310729	ampE	SSON_0119	-	regulatory protein AmpE
116	 52.62	0	129406..130779	-	457	74310730	aroP	SSON_0120	-	aromatic amino acid transporter
117	 55.69	0	131320..132084	+	254	74310731	pdhR	SSON_0121	-	transcriptional regulator PdhR
118	 53.12	0	132245..134908	+	887	74310732	aceE	SSON_0122	-	pyruvate dehydrogenase subunit E1
119	 54.94	0	134923..136815	+	630	74310733	aceF	SSON_0123	-	dihydrolipoamide acetyltransferase
120	 52.49	0	137140..138564	+	474	74310734	lpdA	SSON_0124	-	dihydrolipoamide dehydrogenase
121	 53.36	0	138635..140392	-	585	74310735	yacH	SSON_0125	-	hypothetical protein
122	 55.54	0	140747..143344	+	865	74310736	acnB	SSON_0126	-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
123	 51.52	0	143519..143881	+	120	74310737	yacL	SSON_0127	-	hypothetical protein
124	 46.29	-1	143919..144713	-	264	74310738	speD	SSON_0128	-	S-adenosylmethionine decarboxylase
125	 50.63	0	144729..145595	-	288	74310739	speE	SSON_0129	-	spermidine synthase
126	 49.89	0	145701..146171	-	156	74310740	yacC	SSON_0130	-	hypothetical protein
127	 54.16	0	146214..147764	+	516	74310741	yacK	SSON_0131	-	multicopper oxidase
128	 55.42	0	147811..150201	-	796	74310742	gcd	SSON_0132	-	glucose dehydrogenase
129	 50.84	0	150407..150943	+	178	161986596	hpt	SSON_0133	-	hypoxanthine phosphoribosyltransferase
130	 50.68	0	150984..151646	-	220