version 1.0
Shigella sonnei Ss046, complete genome - 1..4825265 4219 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 112 52.38 0 126337..126777 - 146 74310726 ppdD SSON_0116 - putative major pilin subunit 113 53.36 0 126980..127873 - 297 74310727 nadC SSON_0117 - quinolinate phosphoribosyltransferase 114 53.99 0 127961..128512 + 183 74310728 ampD SSON_0118 - N-acetyl-anhydromuranmyl-L-alanine amidase 115 52.40 0 128509..129363 + 284 74310729 ampE SSON_0119 - regulatory protein AmpE 116 52.62 0 129406..130779 - 457 74310730 aroP SSON_0120 - aromatic amino acid transporter 117 55.69 0 131320..132084 + 254 74310731 pdhR SSON_0121 - transcriptional regulator PdhR 118 53.12 0 132245..134908 + 887 74310732 aceE SSON_0122 - pyruvate dehydrogenase subunit E1 119 54.94 0 134923..136815 + 630 74310733 aceF SSON_0123 - dihydrolipoamide acetyltransferase 120 52.49 0 137140..138564 + 474 74310734 lpdA SSON_0124 - dihydrolipoamide dehydrogenase 121 53.36 0 138635..140392 - 585 74310735 yacH SSON_0125 - hypothetical protein 122 55.54 0 140747..143344 + 865 74310736 acnB SSON_0126 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 123 51.52 0 143519..143881 + 120 74310737 yacL SSON_0127 - hypothetical protein 124 46.29 -1 143919..144713 - 264 74310738 speD SSON_0128 - S-adenosylmethionine decarboxylase 125 50.63 0 144729..145595 - 288 74310739 speE SSON_0129 - spermidine synthase 126 49.89 0 145701..146171 - 156 74310740 yacC SSON_0130 - hypothetical protein 127 54.16 0 146214..147764 + 516 74310741 yacK SSON_0131 - multicopper oxidase 128 55.42 0 147811..150201 - 796 74310742 gcd SSON_0132 - glucose dehydrogenase 129 50.84 0 150407..150943 + 178 161986596 hpt SSON_0133 - hypoxanthine phosphoribosyltransferase 130 50.68 0 150984..151646 - 220 74310744 yadF SSON_0134 - carbonic anhydrase 131 49.19 0 151755..152681 + 308 74310745 yadG SSON_0135 - putative ATP-binding component of a transport system 132 50.71 0 152678..153448 + 256 74310746 yadH SSON_0136 - hypothetical protein 133 49.66 0 153553..153993 + 146 74310747 yadI SSON_0137 - putative PTS system enzyme IIB component 134 49.76 0 154057..155286 + 409 74310748 yadE SSON_0138 - hypothetical protein 135 52.49 0 155290..155670 - 126 74310749 panD SSON_0139 - aspartate alpha-decarboxylase 136 49.16 0 155887..156840 + 317 74310750 yadD SSON_0140 - hypothetical protein 137 53.05 0 157132..157983 - 283 74310751 panC SSON_0141 - pantoate--beta-alanine ligase 138 54.72 0 157995..158789 - 264 74310752 panB SSON_0142 - 3-methyl-2-oxobutanoate hydroxymethyltransferase 139 54.37 0 159623..160126 + 167 74310753 - SSON_0143 - IS1 ORF 140 55.08 0 160653..161558 + 301 161986595 - SSON_0144 - insertion element IS2 transposase InsD 141 42.04 -2 162339..162935 - 198 74310755 yadK SSON_0145 - putative fimbrial protein 142 43.95 -1 162962..163564 - 200 74310756 yadL SSON_0146 - putative fimbrial protein 143 55.19 0 164059..164964 - 301 161986594 - SSON_0147 - insertion element IS2 transposase InsD 144 53.01 0 164922..165287 - 121 161986593 - SSON_0148 - insertion sequence 2 OrfA protein 145 52.81 0 165337..166368 - 343 74310759 - SSON_0149 - IS630 orf 146 54.37 0 167677..168180 - 167 74310760 - SSON_0150 - IS1 ORF 147 44.26 -1 169651..170391 - 246 74310761 ecpD SSON_0152 - putative chaperone protein EcpD 148 44.10 -1 170496..171080 - 194 74310762 yadN SSON_0153 - putative fimbrial-like protein 149 51.67 0 171450..171929 - 159 74310763 folK SSON_0154 - 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase 150 55.81 0 171926..173344 - 472 161986592 pcnB SSON_0155 - poly(A) polymerase I 151 53.51 0 173383..174279 - 298 161986591 yadB SSON_0156 - glutamyl-Q tRNA(Asp) synthetase 152 52.63 0 174346..174801 - 151 74310766 dksA SSON_0157 - DnaK transcriptional regulator DksA 153 49.22 0 174979..175683 - 234 74310767 sfsA SSON_0158 - sugar fermentation stimulation protein A 154 56.11 +1 175698..176237 - 179 74310768 yadP SSON_0159 - hypothetical protein 155 56.28 +1 176257..178731 + 824 74310769 hrpB SSON_0160 - ATP-dependent RNA helicase HrpB 156 55.42 0 178927..181461 + 844 74310770 mrcB SSON_0161 - penicillin-binding protein 1b 157 45.80 -1 181681..183870 + 729 74310771 fhuA SSON_0162 - ferrichrome outer membrane transporter 158 56.27 +1 183921..184718 + 265 74310772 fhuC SSON_0163 - iron-hydroxamate transporter ATP-binding subunit 159 54.66 0 184718..185608 + 296 74310773 fhuD SSON_0164 - iron-hydroxamate transporter substrate-binding subunit 160 59.86 +1 185605..187587 + 660 74310774 fhuB SSON_0165 - iron-hydroxamate transporter permease subunit 161 55.58 0 187745..189025 - 426 74310775 hemL SSON_0166 - glutamate-1-semialdehyde aminotransferase 162 53.87 0 189250..190671 + 473 74310776 yadQ SSON_0167 - chloride channel protein 163 51.01 0 190753..191097 + 114 74310777 yadR SSON_0168 - iron-sulfur cluster insertion protein ErpA 164 53.37 0 191144..191767 - 207 74310778 yadS SSON_0169 - hypothetical protein 165 52.68 0 191805..192605 - 266 74310779 yadT SSON_0170 - vitamin B12-transporter protein BtuF 166 52.93 0 192598..193296 - 232 74310780 pfs SSON_0171 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 167 54.37 0 194463..194966 + 167 74310781 - SSON_0173 - IS1 ORF 168 54.18 0 195804..197228 + 474 74310782 htrA SSON_0174 - serine endoprotease 169 52.68 0 197383..198540 + 385 161986590 yaeG SSON_0175 - carbohydrate diacid transcriptional activator CdaR 170 44.70 -1 198629..199015 - 128 74310784 yaeH SSON_0176 - hypothetical protein 171 51.26 0 199177..199968 - 263 161986589 yaeI SSON_0177 - phosphodiesterase YaeI 172 52.97 0 200044..200868 - 274 74310786 dapD SSON_0178 - 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase 173 53.39 0 200899..203571 - 890 74310787 glnD SSON_0179 - PII uridylyl-transferase 174 50.94 0 203633..204427 - 264 74310788 map SSON_0180 - methionine aminopeptidase 175 51.24 0 204795..205520 + 241 74310789 rpsB SSON_0181 - 30S ribosomal protein S2 176 50.00 0 205778..206629 + 283 74310790 tsf SSON_0182 - elongation factor Ts 177 52.75 0 206776..207501 + 241 74310791 pyrH SSON_0183 - uridylate kinase 178 50.90 0 207793..208350 + 185 74310792 frr SSON_0184 - ribosome recycling factor 179 52.38 0 208442..209638 + 398 74310793 yaeM SSON_0185 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase 180 49.74 0 209824..210585 + 253 74310794 yaeS SSON_0186 - undecaprenyl pyrophosphate synthase 181 50.82 0 210598..211455 + 285 161986588 cdsA SSON_0187 - CDP-diglyceride synthase 182 50.78 0 211467..212819 + 450 74310796 yaeL SSON_0188 - zinc metallopeptidase 183 50.47 0 212849..215281 + 810 74310797 yaeT SSON_0189 - outer membrane protein assembly factor YaeT 184 50.21 0 215403..215888 + 161 74310798 hlpA SSON_0190 - periplasmic chaperone 185 53.02 0 215892..216917 + 341 74310799 lpxD SSON_0191 - UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 186 50.44 0 217022..217477 + 151 74310800 fabZ SSON_0192 - (3R)-hydroxymyristoyl-ACP dehydratase 187 53.11 0 217481..218269 + 262 74310801 lpxA SSON_0193 - UDP-N-acetylglucosamine acyltransferase 188 53.70 0 218269..219417 + 382 74310802 lpxB SSON_0194 - lipid-A-disaccharide synthase 189 57.29 +1 219414..220010 + 198 74310803 rnhB SSON_0195 - ribonuclease HII 190 55.21 0 220047..223529 + 1160 74310804 dnaE SSON_0196 - DNA polymerase III subunit alpha 191 52.60 0 223542..224501 + 319 74310805 accA SSON_0197 - acetyl-CoA carboxylase carboxyltransferase subunit alpha 192 53.90 0 224550..225896 - 448 74310806 - SSON_0198 - IS4 orf 193 51.17 0 226039..228180 + 713 74310807 ldcC SSON_0199 - lysine decarboxylase 2, constitutive 194 51.54 0 228237..228626 + 129 161986587 yaeR SSON_0200 - hypothetical protein 195 57.89 +1 228691..229989 + 432 74310809 tilS SSON_0201 - tRNA(Ile)-lysidine synthetase 196 47.13 -1 230038..230298 - 86 74310810 yaeO SSON_0202 - Rho-binding antiterminator 197 50.75 0 230285..230485 - 66 74310811 yaeP SSON_0203 - hypothetical protein 198 52.56 0 230651..231196 + 181 74310812 yaeQ SSON_0204 - hypothetical protein 199 51.62 0 231628..232338 + 236 74310813 cutF SSON_0206 - lipoprotein involved with copper homeostasis and adhesion 200 49.33 0 232493..233317 - 274 161986586 yaeF SSON_0207 - hypothetical protein 201 54.45 0 233370..235088 - 572 74310815 proS SSON_0208 - prolyl-tRNA synthetase 202 54.94 0 235199..235906 - 235 74310816 yaeB SSON_0209 - hypothetical protein 203 53.83 0 235903..236307 - 134 74310817 rcsF SSON_0210 - outer membrane lipoprotein 204 48.77 0 236425..237240 - 271 74310818 metQ SSON_0211 - DL-methionine transporter substrate-binding subunit 205 51.99 0 237280..237933 - 217 74310819 yaeE SSON_0212 - DL-methionine transporter permease subunit 206 52.42 0 237926..238957 - 343 74310820 metN SSON_0213 - DL-methionine transporter ATP-binding subunit 207 50.00 0 239145..239720 + 191 74310821 yaeD SSON_0214 - D,D-heptose 1,7-bisphosphate phosphatase 208 45.77 -1 245604..246407 + 267 74310822 dkgB SSON_0221 - 2,5-diketo-D-gluconate reductase B 209 49.51 0 246404..247318 - 304 74310823 yafC SSON_0222 - putative transcriptional regulator LYSR-type 210 52.68 0 247559..248359 + 266 74310824 yafD SSON_0223 - hypothetical protein 211 49.68 0 248363..248986 + 207 74310825 yafE SSON_0224 - putative biotin synthesis protein 51.65 MEAN 4.20 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0