IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
112	 52.38	0	126337..126777	-	146	74310726	ppdD	SSON_0116	-	putative major pilin subunit
113	 53.36	0	126980..127873	-	297	74310727	nadC	SSON_0117	-	quinolinate phosphoribosyltransferase
114	 53.99	0	127961..128512	+	183	74310728	ampD	SSON_0118	-	N-acetyl-anhydromuranmyl-L-alanine amidase
115	 52.40	0	128509..129363	+	284	74310729	ampE	SSON_0119	-	regulatory protein AmpE
116	 52.62	0	129406..130779	-	457	74310730	aroP	SSON_0120	-	aromatic amino acid transporter
117	 55.69	0	131320..132084	+	254	74310731	pdhR	SSON_0121	-	transcriptional regulator PdhR
118	 53.12	0	132245..134908	+	887	74310732	aceE	SSON_0122	-	pyruvate dehydrogenase subunit E1
119	 54.94	0	134923..136815	+	630	74310733	aceF	SSON_0123	-	dihydrolipoamide acetyltransferase
120	 52.49	0	137140..138564	+	474	74310734	lpdA	SSON_0124	-	dihydrolipoamide dehydrogenase
121	 53.36	0	138635..140392	-	585	74310735	yacH	SSON_0125	-	hypothetical protein
122	 55.54	0	140747..143344	+	865	74310736	acnB	SSON_0126	-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
123	 51.52	0	143519..143881	+	120	74310737	yacL	SSON_0127	-	hypothetical protein
124	 46.29	-1	143919..144713	-	264	74310738	speD	SSON_0128	-	S-adenosylmethionine decarboxylase
125	 50.63	0	144729..145595	-	288	74310739	speE	SSON_0129	-	spermidine synthase
126	 49.89	0	145701..146171	-	156	74310740	yacC	SSON_0130	-	hypothetical protein
127	 54.16	0	146214..147764	+	516