IslandPathversion 1.0

IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1369	 54.17	0	1540933..1541436	-	167	74311986	-	SSON_1467	-	IS1 ORF
1370	 54.99	0	1541786..1542898	-	370	74311987	-	SSON_1468	-	putative inner membrane protein
1371	 53.78	0	1543287..1546343	+	1018	74311988	ydiJ	SSON_1469	-	putative oxidase
1372	 50.85	0	1546340..1546750	+	136	74311989	-	SSON_1470	-	hypothetical protein
1373	 44.07	-1	1546769..1547038	+	89	74311990	-	SSON_1471	-	hypothetical protein
1374	 53.39	0	1547586..1547954	+	122	74311991	sufA	SSON_1472	-	iron-sulfur cluster assembly scaffold protein
1375	 51.54	0	1547924..1549450	+	508	74311992	ynhE	SSON_1473	-	cysteine desulfurase activator complex subunit SufB
1376	 50.47	0	1549460..1550206	+	248	74311993	sufC	SSON_1474	-	cysteine desulfurase ATPase component
1377	 52.83	0	1550181..1551452	+	423	74311994	ynhC	SSON_1475	-	cysteine desulfurase activator complex subunit SufD
1378	 54.87	0	1551449..1552669	+	406	74311995	-	SSON_1476	-	selenocysteine lyase
1379	 48.92	0	1552682..1553098	+	138	74311996	ynhA	SSON_1477	-	cysteine desufuration protein SufE
1380	 51.54	0	1553247..1554251	+	334	74311997	ynhG	SSON_1478	-	hypothetical protein
1381	 50.63	0	1554314..1554550	-	78	74311998	lpp	SSON_1479	-	murein lipoprotein
1382	 50.11	0	1554860..1556272	-	470	74311999	pykF	SSON_1480	-	pyruvate kinase
1383	 46.67	-1	1556829..1557038	+	69	74312000	-	SSON_1481	-	hypothetical protein
1384	 49.28	0	1557494..1558120	+	208