version 1.0
Shigella sonnei Ss046, complete genome - 1..4825265 4219 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1363 54.37 0 1533749..1534252 + 167 74311980 - SSON_1459 - IS1 ORF 1364 50.72 0 1534974..1535732 - 252 74311981 aroD SSON_1461 - 3-dehydroquinate dehydratase 1365 47.75 0 1535763..1536629 - 288 74311982 ydiB SSON_1462 - quinate/shikimate dehydrogenase 1366 45.52 -1 1536641..1537912 - 423 74311983 - SSON_1463 - putative amino acid/amine transport protein 1367 54.37 0 1538477..1538980 - 167 74311984 - SSON_1464 - IS1 ORF 1368 45.31 -1 1540224..1540607 - 127 74311985 - SSON_1466 - hypothetical protein 1369 54.17 0 1540933..1541436 - 167 74311986 - SSON_1467 - IS1 ORF 1370 54.99 0 1541786..1542898 - 370 74311987 - SSON_1468 - putative inner membrane protein 1371 53.78 0 1543287..1546343 + 1018 74311988 ydiJ SSON_1469 - putative oxidase 1372 50.85 0 1546340..1546750 + 136 74311989 - SSON_1470 - hypothetical protein 1373 44.07 -1 1546769..1547038 + 89 74311990 - SSON_1471 - hypothetical protein 1374 53.39 0 1547586..1547954 + 122 74311991 sufA SSON_1472 - iron-sulfur cluster assembly scaffold protein 1375 51.54 0 1547924..1549450 + 508 74311992 ynhE SSON_1473 - cysteine desulfurase activator complex subunit SufB 1376 50.47 0 1549460..1550206 + 248 74311993 sufC SSON_1474 - cysteine desulfurase ATPase component 1377 52.83 0 1550181..1551452 + 423 74311994 ynhC SSON_1475 - cysteine desulfurase activator complex subunit SufD 1378 54.87 0 1551449..1552669 + 406 74311995 - SSON_1476 - selenocysteine lyase 1379 48.92 0 1552682..1553098 + 138 74311996 ynhA SSON_1477 - cysteine desufuration protein SufE 1380 51.54 0 1553247..1554251 + 334 74311997 ynhG SSON_1478 - hypothetical protein 1381 50.63 0 1554314..1554550 - 78 74311998 lpp SSON_1479 - murein lipoprotein 1382 50.11 0 1554860..1556272 - 470 74311999 pykF SSON_1480 - pyruvate kinase 1383 46.67 -1 1556829..1557038 + 69 74312000 - SSON_1481 - hypothetical protein 1384 49.28 0 1557494..1558120 + 208 74312001 - SSON_1482 - hypothetical protein 1385 48.17 0 1558141..1560249 + 702 74312002 - SSON_1483 - putative oxidoreductase 1386 52.47 0 1560253..1560900 + 215 74312003 - SSON_1484 - hypothetical protein 1387 49.86 0 1560913..1561632 + 239 74312004 - SSON_1485 - putative oxidoreductase, Fe-S subunit 1388 49.24 0 1561629..1562414 + 261 74312005 ydhU SSON_1486 - hypothetical protein 1389 52.77 0 1562418..1563230 + 270 74312006 - SSON_1487 - hypothetical protein 1390 47.79 0 1563242..1564846 - 534 74312007 - SSON_1488 - hypothetical protein 1391 44.77 -1 1564972..1565277 - 101 74312008 - SSON_1489 - hypothetical protein 1392 51.79 0 1565850..1567106 + 418 74312009 - SSON_1492 - hypothetical protein 1393 52.77 0 1567147..1568520 - 457 74312010 ydhE SSON_1493 - multidrug efflux protein 1394 47.51 0 1568735..1569376 + 213 74312011 ribE SSON_1494 - riboflavin synthase subunit alpha 1395 48.30 0 1569416..1570564 - 382 74312012 cfa SSON_1495 - cyclopropane fatty acyl phospholipid synthase 1396 53.30 0 1570855..1572066 - 403 74312013 ydhC SSON_1496 - inner membrane transport protein YdhC 1397 53.80 0 1572179..1573111 + 310 74312014 ydhB SSON_1497 - putative DNA-binding transcriptional regulator 1398 53.12 0 1573108..1574133 - 341 74312015 purR SSON_1498 - DNA-binding transcriptional repressor PurR 1399 53.93 0 1574687..1575856 + 389 74312016 - SSON_1499 - putative transport protein 1400 49.83 0 1576002..1576583 - 193 74312017 sodB SSON_1500 - superoxide dismutase 1401 47.79 0 1576711..1577526 - 271 74312018 ydhO SSON_1501 - putative lipoprotein 1402 52.30 0 1577860..1578207 + 115 74312019 ydhD SSON_1502 - hypothetical protein 1403 54.63 0 1582920..1583567 - 215 74312020 rnt SSON_1504 - ribonuclease T 1404 51.72 0 1583670..1584077 - 135 74312021 gloA SSON_1505 - glyoxalase I 1405 53.37 0 1584158..1585255 - 365 74312022 nemA SSON_1506 - N-ethylmaleimide reductase 1406 51.83 0 1585292..1585891 - 199 74312024 - SSON_1508 - hypothetical protein 1407 48.41 0 1585856..1586233 + 125 74312023 - SSON_1507 - hypothetical protein 1408 52.73 0 1586282..1587178 + 298 74312025 - SSON_1509 - hypothetical protein 1409 53.07 0 1587259..1587780 + 173 74312026 sodC SSON_1510 - superoxide dismutase 1410 53.16 0 1587781..1589772 - 663 74312027 - SSON_1511 - hypothetical protein 1411 50.11 0 1589793..1590692 - 299 74312028 - SSON_1512 - hypothetical protein 1412 48.52 0 1590653..1590889 - 78 74312029 - SSON_1513 - hypothetical protein 1413 48.05 0 1591090..1591524 + 144 161986532 slyA SSON_1514 - transcriptional regulator SlyA 1414 51.28 0 1591571..1592038 - 155 74312031 slyB SSON_1515 - putative outer membrane protein 1415 55.05 0 1592312..1593421 + 369 74312032 anmK SSON_1516 - anhydro-N-acetylmuramic acid kinase 1416 44.98 -1 1593600..1593848 + 82 74312033 ydhA SSON_1517 - hypothetical protein 1417 51.75 0 1593907..1594563 + 218 74312034 pdxH SSON_1518 - pyridoxamine 5'-phosphate oxidase 1418 52.08 0 1594692..1595966 + 424 74312035 tyrS SSON_1519 - tyrosyl-tRNA synthetase 1419 52.89 0 1596025..1596888 + 287 74312036 pdxY SSON_1520 - pyridoxamine kinase 1420 51.49 0 1597443..1598081 - 212 74312037 - SSON_1521 - IS4 orf 1421 57.65 +1 1598200..1598787 - 195 74312038 - SSON_1522 - IS4 orf 1422 51.30 0 1599079..1600581 - 500 74312039 tppB SSON_1524 - putative tripeptide transporter permease 1423 49.06 0 1601192..1601827 - 211 74312040 nth SSON_1525 - endonuclease III 1424 52.73 0 1601827..1602522 - 231 74312041 ydgQ SSON_1526 - SoxR-reducing system protein RsxE 1425 52.82 0 1602526..1603146 - 206 74312042 - SSON_1527 - electron transport complex protein RnfG 1426 52.88 0 1603150..1604208 - 352 74312043 rnfD SSON_1528 - electron transport complex protein RnfD 1427 55.15 0 1604209..1606431 - 740 74312044 - SSON_1529 - electron transport complex protein RnfC 1428 54.58 0 1606424..1607002 - 192 74312045 - SSON_1530 - electron transport complex protein RnfB 1429 51.37 0 1607002..1607583 - 193 74312046 - SSON_1531 - Na(+)-translocating NADH-quinone reductase subunit E 1430 48.82 0 1607660..1608124 - 154 74312047 - SSON_1532 - hypothetical protein 1431 47.22 -1 1608186..1608401 - 71 74312048 - SSON_1533 - oriC-binding nucleoid-associated protein 1432 53.89 0 1609035..1610075 + 346 161986531 - SSON_1534 - putative oxidoreductase 1433 53.59 0 1610111..1611112 - 333 74312050 add SSON_1535 - adenosine deaminase 1434 51.41 0 1611216..1612388 - 390 74312051 malY SSON_1536 - hypothetical protein 1435 53.17 0 1612398..1613990 - 530 74312052 malX SSON_1537 - bifunctional maltose and glucose-specific PTS system components IICB 1436 54.52 0 1614165..1615193 + 342 74312053 malI SSON_1538 - DNA-binding transcriptional repressor MalI 1437 46.53 -1 1615396..1615698 + 100 74312054 - SSON_1539 - IS600 ORF1 1438 51.96 0 1615839..1616552 + 237 74312055 - SSON_1540 - IS600 ORF2 1439 48.44 0 1616635..1617402 + 255 74312056 hdhA SSON_1541 - 7-alpha-hydroxysteroid dehydrogenase 1440 50.25 0 1617623..1618213 + 196 74312057 uidR SSON_1542 - repressor for uid operon 1441 52.37 0 1618602..1620413 + 603 74312058 uidA SSON_1543 - beta-D-glucuronidase 1442 51.38 0 1620410..1621783 + 457 74312059 uidB SSON_1544 - glucuronide transporter 1443 47.22 -1 1621822..1623132 + 436 74312060 uidC SSON_1545 - putative outer membrane porin protein 1444 49.17 0 1623313..1624821 - 502 74312061 ydgA SSON_1546 - hypothetical protein 1445 50.85 0 1624922..1626097 - 391 74312062 manA SSON_1547 - mannose-6-phosphate isomerase 1446 50.52 0 1626296..1627942 + 548 74312063 fumA SSON_1548 - fumarase A 1447 54.13 0 1628085..1629488 + 467 74312064 fumC SSON_1549 - fumarate hydratase 1448 51.29 0 1629485..1630414 - 309 74312065 tus SSON_1550 - DNA replication terminus site-binding protein 1449 50.69 0 1630490..1631791 - 433 74312066 rstB SSON_1551 - sensor protein RstB 1450 49.11 0 1631795..1632523 - 242 74312067 rstA SSON_1552 - DNA-binding transcriptional regulator RstA 1451 47.02 -1 1632643..1632978 + 111 74312068 ydgC SSON_1553 - hypothetical protein 1452 51.73 0 1632975..1633697 - 240 74312069 ydgB SSON_1554 - short chain dehydrogenase 1453 53.43 0 1633734..1635116 - 460 74312070 - SSON_1555 - putative arginine/ornithine antiporter 1454 50.69 0 1635302..1636246 - 314 74312071 ydgH SSON_1556 - hypothetical protein 1455 52.38 0 1636770..1638302 + 510 74312072 pntA SSON_1557 - NAD(P) transhydrogenase subunit alpha 1456 52.99 0 1638313..1639701 + 462 74312073 pntB SSON_1558 - pyridine nucleotide transhydrogenase 1457 49.86 0 1639726..1640760 - 344 74312074 tqsA SSON_1559 - putative transport protein 1458 42.90 -2 1641172..1641537 + 121 74312075 - SSON_1560 - multidrug efflux system protein MdtJ 1459 51.82 0 1641524..1641853 + 109 74312076 - SSON_1561 - multidrug efflux system protein MdtI 1460 51.46 0 1641892..1642713 - 273 74312077 - SSON_1562 - hypothetical protein 1461 53.85 0 1642989..1643261 - 90 74312078 asr SSON_1563 - acid shock protein precursor 1462 54.27 0 1643385..1644005 - 206 74312079 - SSON_1564 - IS2 ORF2 51.65 MEAN 4.20 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0