IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1355	 49.03	0	1523925..1524389	+	154	74311972	nlpC	SSON_1450	-	lipoprotein
1356	 52.91	0	1524490..1525521	+	343	74311973	-	SSON_1451	-	IS630 orf
1357	 42.44	-2	1525791..1526504	+	237	74311974	-	SSON_1452	-	hypothetical protein
1358	 52.40	0	1526567..1528003	+	478	74311975	-	SSON_1453	-	hypothetical protein
1359	 51.56	0	1528007..1528198	-	63	74311976	ydiE	SSON_1454	-	hypothetical protein
1360	 52.91	0	1528330..1529376	-	348	74311977	aroH	SSON_1455	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1361	 50.72	0	1529533..1530366	-	277	74311978	ydiA	SSON_1456	-	hypothetical protein
1362	 54.85	0	1530699..1533077	+	792	74311979	ppsA	SSON_1457	-	phosphoenolpyruvate synthase
1363	 54.37	0	1533749..1534252	+	167	74311980	-	SSON_1459	-	IS1 ORF
1364	 50.72	0	1534974..1535732	-	252	74311981	aroD	SSON_1461	-	3-dehydroquinate dehydratase
1365	 47.75	0	1535763..1536629	-	288	74311982	ydiB	SSON_1462	-	quinate/shikimate dehydrogenase
1366	 45.52	-1	1536641..1537912	-	423	74311983	-	SSON_1463	-	putative amino acid/amine transport protein
1367	 54.37	0	1538477..1538980	-	167	74311984	-	SSON_1464	-	IS1 ORF
1368	 45.31	-1	1540224..1540607	-	127	74311985	-	SSON_1466	-	hypothetical protein
1369	 54.17	0	1540933..1541436	-	167	74311986	-	SSON_1467	-	IS1 ORF
1370	 54.99	0	1541786..1542898	-	370