IslandPathversion 1.0

IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1352	 55.25	0	1521504..1522484	+	326	74311969	btuC	SSON_1447	-	vtamin B12-transporter permease
1353	 49.46	0	1522547..1523098	+	183	74311970	btuE	SSON_1448	-	putative glutathione peroxidase
1354	 54.40	0	1523098..1523847	+	249	74311971	btuD	SSON_1449	-	vitamin B12-transporter ATPase
1355	 49.03	0	1523925..1524389	+	154	74311972	nlpC	SSON_1450	-	lipoprotein
1356	 52.91	0	1524490..1525521	+	343	74311973	-	SSON_1451	-	IS630 orf
1357	 42.44	-2	1525791..1526504	+	237	74311974	-	SSON_1452	-	hypothetical protein
1358	 52.40	0	1526567..1528003	+	478	74311975	-	SSON_1453	-	hypothetical protein
1359	 51.56	0	1528007..1528198	-	63	74311976	ydiE	SSON_1454	-	hypothetical protein
1360	 52.91	0	1528330..1529376	-	348	74311977	aroH	SSON_1455	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1361	 50.72	0	1529533..1530366	-	277	74311978	ydiA	SSON_1456	-	hypothetical protein
1362	 54.85	0	1530699..1533077	+	792	74311979	ppsA	SSON_1457	-	phosphoenolpyruvate synthase
1363	 54.37	0	1533749..1534252	+	167	74311980	-	SSON_1459	-	IS1 ORF
1364	 50.72	0	1534974..1535732	-	252	74311981	aroD	SSON_1461	-	3-dehydroquinate dehydratase
1365	 47.75	0	1535763..1536629	-	288	74311982	ydiB	SSON_1462	-	quinate/shikimate dehydrogenase
1366	 45.52	-1	1536641..1537912	-	423	74311983	-	SSON_1463	-	putative amino acid/amine transport protein
1367	 54.37	0	1538477..1538980	-	167