IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1341	 49.41	0	1509796..1510554	+	252	74311958	-	SSON_1435	-	hypothetical protein
1342	 47.95	0	1510607..1510825	-	72	74311959	-	SSON_1436	-	hypothetical protein
1343	 54.17	0	1512504..1513007	+	167	74311960	-	SSON_1437	-	IS1 ORF
1344	 49.77	0	1514087..1516015	+	642	74311961	thrS	SSON_1439	-	threonyl-tRNA synthetase
1345	 47.82	0	1516127..1516561	+	144	74311962	infC	SSON_1440	-	translation initiation factor IF-3
1346	 50.00	0	1516658..1516855	+	65	74311963	rpmI	SSON_1441	-	50S ribosomal protein L35
1347	 48.46	0	1516908..1517264	+	118	74311964	rplT	SSON_1442	-	50S ribosomal protein L20
1348	 35.56	-2	1517387..1517431	+	14	74311965	-	SSON_1443	-	hypothetical protein
1349	 53.96	0	1517714..1518697	+	327	74311966	pheS	SSON_1444	-	phenylalanyl-tRNA synthetase subunit alpha
1350	 53.85	0	1518712..1521099	+	795	74311967	pheT	SSON_1445	-	phenylalanyl-tRNA synthetase subunit beta
1351	 50.00	0	1521104..1521403	+	99	74311968	ihfA	SSON_1446	-	integration host factor subunit alpha
1352	 55.25	0	1521504..1522484	+	326	74311969	btuC	SSON_1447	-	vtamin B12-transporter permease
1353	 49.46	0	1522547..1523098	+	183	74311970	btuE	SSON_1448	-	putative glutathione peroxidase
1354	 54.40	0	1523098..1523847	+	249	74311971	btuD	SSON_1449	-	vitamin B12-transporter ATPase
1355	 49.03	0	1523925..1524389	+	154	74311972	nlpC	SSON_1450	-	lipoprotein
1356	 52.91	0	1524490..1525521	+	343