IslandPathversion 1.0

IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1337	 44.13	-1	1506646..1507182	+	178	74311954	-	SSON_1431	-	hypothetical protein
1338	 51.80	0	1507223..1508083	-	286	74311955	-	SSON_1432	-	hypothetical protein
1339	 43.64	-1	1508189..1508479	-	96	74311956	-	SSON_1433	-	hypothetical protein
1340	 53.98	0	1508580..1509509	-	309	74311957	pfkB	SSON_1434	-	6-phosphofructokinase 2
1341	 49.41	0	1509796..1510554	+	252	74311958	-	SSON_1435	-	hypothetical protein
1342	 47.95	0	1510607..1510825	-	72	74311959	-	SSON_1436	-	hypothetical protein
1343	 54.17	0	1512504..1513007	+	167	74311960	-	SSON_1437	-	IS1 ORF
1344	 49.77	0	1514087..1516015	+	642	74311961	thrS	SSON_1439	-	threonyl-tRNA synthetase
1345	 47.82	0	1516127..1516561	+	144	74311962	infC	SSON_1440	-	translation initiation factor IF-3
1346	 50.00	0	1516658..1516855	+	65	74311963	rpmI	SSON_1441	-	50S ribosomal protein L35
1347	 48.46	0	1516908..1517264	+	118	74311964	rplT	SSON_1442	-	50S ribosomal protein L20
1348	 35.56	-2	1517387..1517431	+	14	74311965	-	SSON_1443	-	hypothetical protein
1349	 53.96	0	1517714..1518697	+	327	74311966	pheS	SSON_1444	-	phenylalanyl-tRNA synthetase subunit alpha
1350	 53.85	0	1518712..1521099	+	795	74311967	pheT	SSON_1445	-	phenylalanyl-tRNA synthetase subunit beta
1351	 50.00	0	1521104..1521403	+	99	74311968	ihfA	SSON_1446	-	integration host factor subunit alpha
1352	 55.25	0	1521504..1522484	+	326