IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1322	 51.33	0	1490869..1491507	+	212	74311939	-	SSON_1416	-	hypothetical protein
1323	 51.35	0	1491467..1492354	-	295	74311940	-	SSON_1417	-	nucleotide excision repair endonuclease
1324	 49.28	0	1492584..1493411	-	275	74311941	nadE	SSON_1418	-	NAD synthetase
1325	 48.97	0	1493613..1493951	+	112	74311942	osmE	SSON_1419	-	DNA-binding transcriptional activator OsmE
1326	 43.93	-1	1494250..1494570	+	106	74311943	celA	SSON_1420	-	N,N'-diacetylchitobiose-specific PTS system transporter subunit IIB
1327	 49.45	0	1494655..1496013	+	452	74311944	celB	SSON_1421	-	N,N'-diacetylchitobiose-specific PTS system transporter subunit IIC
1328	 49.29	0	1496064..1496414	+	116	74311945	celC	SSON_1422	-	N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA
1329	 41.64	-2	1496422..1497264	+	280	74311946	celD	SSON_1423	-	DNA-binding transcriptional regulator ChbR
1330	 46.78	-1	1497369..1498721	+	450	74311947	celF	SSON_1424	-	cryptic phospho-beta-glucosidase
1331	 50.59	0	1498734..1499492	+	252	74311948	ydjC	SSON_1425	-	hypothetical protein
1332	 51.50	0	1499750..1502011	-	753	74311949	katE	SSON_1426	-	hydroperoxidase II
1333	 51.52	0	1502194..1502457	+	87	74311950	-	SSON_1427	-	cell division modulator
1334	 52.59	0	1503554..1504945	-	463	74311951	-	SSON_1428	-	kinase fragment
1335	 51.27	0	1505078..1505668	-	196	161986533	-	SSON_1429	-	hypothetical protein
1336	 51.72	0	1505831..1506499	-	222	74311953	yniC	SSON_1430	-	2-deoxyglucos