IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1314	 47.69	0	1480981..1481739	-	252	74311931	ydjX	SSON_1407	-	hypothetical protein
1315	 53.16	0	1481858..1482664	-	268	74311932	xthA	SSON_1408	-	exonuclease III
1316	 54.87	0	1483110..1484330	+	406	74311933	cstC	SSON_1409	-	bifunctional succinylornithine transaminase/acetylornithine transaminase
1317	 56.23	+1	1484327..1485361	+	344	74311934	-	SSON_1410	-	arginine succinyltransferase
1318	 55.28	0	1486833..1488176	+	447	74311935	-	SSON_1412	-	succinylarginine dihydrolase
1319	 53.66	0	1488169..1489137	+	322	74311936	ydjS	SSON_1413	-	succinylglutamate desuccinylase
1320	 51.95	0	1489467..1489928	+	153	74311937	spy	SSON_1414	-	periplasmic protein
1321	 54.37	0	1490173..1490676	+	167	74311938	-	SSON_1415	-	IS1 ORF
1322	 51.33	0	1490869..1491507	+	212	74311939	-	SSON_1416	-	hypothetical protein
1323	 51.35	0	1491467..1492354	-	295	74311940	-	SSON_1417	-	nucleotide excision repair endonuclease
1324	 49.28	0	1492584..1493411	-	275	74311941	nadE	SSON_1418	-	NAD synthetase
1325	 48.97	0	1493613..1493951	+	112	74311942	osmE	SSON_1419	-	DNA-binding transcriptional activator OsmE
1326	 43.93	-1	1494250..1494570	+	106	74311943	celA	SSON_1420	-	N,N'-diacetylchitobiose-specific PTS system transporter subunit IIB
1327	 49.45	0	1494655..1496013	+	452	74311944	celB	SSON_1421	-	N,N'-diacetylchitobiose-specific PTS system transporter subunit IIC
1328	 49.29	0	1496064..1496414	+	116	74311945	celC	SSON_1422	-	N,N'-diacetylchitobiose-specific