IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1306	 53.92	0	1472418..1472825	-	135	74311923	-	SSON_1397	-	pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase
1307	 54.37	0	1473432..1473935	+	167	74311924	-	SSON_1399	-	IS1 ORF
1308	 53.67	0	1474317..1475639	-	440	74311925	-	SSON_1400	-	putative thiosulfate sulfur transferase
1309	 52.29	0	1475691..1476344	-	217	74311926	-	SSON_1401	-	putative ATP-binding component of a transport system
1310	 56.04	+1	1477853..1479019	-	388	74311927	-	SSON_1403	-	hypothetical protein
1311	 56.28	+1	1479029..1479577	-	182	74311928	ynjA	SSON_1404	-	hypothetical protein
1312	 51.41	0	1479577..1480284	-	235	74311929	ydjZ	SSON_1405	-	hypothetical protein
1313	 49.64	0	1480299..1481138	-	279	74311930	ydjY	SSON_1406	-	hypothetical protein
1314	 47.69	0	1480981..1481739	-	252	74311931	ydjX	SSON_1407	-	hypothetical protein
1315	 53.16	0	1481858..1482664	-	268	74311932	xthA	SSON_1408	-	exonuclease III
1316	 54.87	0	1483110..1484330	+	406	74311933	cstC	SSON_1409	-	bifunctional succinylornithine transaminase/acetylornithine transaminase
1317	 56.23	+1	1484327..1485361	+	344	74311934	-	SSON_1410	-	arginine succinyltransferase
1318	 55.28	0	1486833..1488176	+	447	74311935	-	SSON_1412	-	succinylarginine dihydrolase
1319	 53.66	0	1488169..1489137	+	322	74311936	ydjS	SSON_1413	-	succinylglutamate desuccinylase
1320	 51.95	0	1489467..1489928	+	153	74311937	spy	SSON_1414	-	periplasmic protein
1321	 54.37	0	1490173..1490676	+	167