IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1296	 44.65	-1	1460533..1460850	+	105	74311913	-	SSON_1386	-	hypothetical protein
1297	 52.96	0	1461011..1461652	-	213	161986534	ydjB	SSON_1387	-	nicotinamidase/pyrazinamidase
1298	 51.13	0	1461663..1462679	-	338	74311915	ansA	SSON_1388	-	cytoplasmic asparaginase I
1299	 52.13	0	1462846..1464702	-	618	74311916	sppA	SSON_1389	-	protease 4
1300	 55.80	0	1464863..1465414	+	183	74311917	ydjA	SSON_1390	-	hypothetical protein
1301	 55.17	0	1465531..1466574	+	347	74311918	selD	SSON_1391	-	selenophosphate synthetase
1302	 55.05	0	1466579..1468540	+	653	74311919	topB	SSON_1392	-	DNA topoisomerase III
1303	 54.56	0	1468588..1469091	-	167	74311920	-	SSON_1393	-	IS1 ORF
1304	 53.27	0	1470601..1471944	-	447	74311921	gdhA	SSON_1395	-	glutamate dehydrogenase
1305	 50.92	0	1472180..1472452	+	90	74311922	-	SSON_1396	-	hypothetical protein
1306	 53.92	0	1472418..1472825	-	135	74311923	-	SSON_1397	-	pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase
1307	 54.37	0	1473432..1473935	+	167	74311924	-	SSON_1399	-	IS1 ORF
1308	 53.67	0	1474317..1475639	-	440	74311925	-	SSON_1400	-	putative thiosulfate sulfur transferase
1309	 52.29	0	1475691..1476344	-	217	74311926	-	SSON_1401	-	putative ATP-binding component of a transport system
1310	 56.04	+1	1477853..1479019	-	388	74311927	-	SSON_1403	-	hypothetical protein
1311	 56.28	+1	1479029..1479577	-	182