IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1278	 51.76	0	1442803..1443057	+	84	74311895	yoaF	SSON_1368	-	hypothetical protein
1279	 52.57	0	1443079..1443447	-	122	74311896	yeaO	SSON_1369	-	hypothetical protein
1280	 52.45	0	1443481..1444662	-	393	74311897	yeaN	SSON_1370	-	putative amino acid/amine transport protein
1281	 49.88	0	1444759..1445580	+	273	74311898	yeaM	SSON_1371	-	putative ARAC-type regulatory protein
1282	 55.70	0	1445537..1445983	-	148	74311899	yeaL	SSON_1372	-	hypothetical protein
1283	 46.41	-1	1446105..1446257	+	50	74311900	-	SSON_1373	-	hypothetical protein
1284	 50.00	0	1446258..1446761	-	167	74311901	yeaK	SSON_1374	-	hypothetical protein
1285	 45.83	-1	1446804..1448243	-	479	74311902	yeaJ	SSON_1375	-	hypothetical protein
1286	 54.37	0	1448286..1448789	-	167	74311903	-	SSON_1376	-	IS1 ORF
1287	 38.28	-2	1449251..1450726	-	491	74311904	yeaI	SSON_1377	-	hypothetical protein
1288	 49.22	0	1450873..1452156	-	427	74311905	yeaH	SSON_1378	-	hypothetical protein
1289	 50.03	0	1452269..1454203	-	644	74311906	yeaG	SSON_1379	-	hypothetical protein
1290	 52.48	0	1454639..1455385	+	248	74311907	yeaF	SSON_1380	-	hypothetical protein
1291	 50.41	0	1455475..1456329	+	284	74311908	-	SSON_1381	-	putative an aldehyde reductase
1292	 49.67	0	1456380..1457285	-	301	74311909	yeaD	SSON_1382	-	hypothetical protein
1293	 53.90	0	1457332..1458678	-	448