IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1263	 55.26	0	1426875..1428785	+	636	74311880	yoaA	SSON_1353	-	putative enzyme
1264	 55.46	0	1428843..1429538	+	231	74311881	yeaZ	SSON_1354	-	hypothetical protein
1265	 50.52	0	1429578..1430159	+	193	74311882	-	SSON_1355	-	putative outer membrane protein
1266	 51.19	0	1430364..1432049	+	561	74311883	fadD	SSON_1356	-	long-chain-fatty-acid--CoA ligase
1267	 53.99	0	1432119..1433246	+	375	74311884	rnd	SSON_1357	-	ribonuclease D
1268	 50.62	0	1433300..1434265	-	321	74311885	yeaX	SSON_1358	-	putative diogenase beta subunit
1269	 51.73	0	1434321..1435445	-	374	74311886	yeaW	SSON_1359	-	hypothetical protein
1270	 50.83	0	1435477..1436922	-	481	74311887	yeaV	SSON_1360	-	putative transporter
1271	 53.68	0	1437338..1438423	-	361	74311888	yeaU	SSON_1361	-	putative tartrate dehydrogenase
1272	 51.96	0	1438505..1439449	+	314	74311889	yeaT	SSON_1362	-	putative transcriptional regulator LYSR-type
1273	 45.38	-1	1439576..1440214	+	212	74311890	yeaS	SSON_1363	-	leucine export protein LeuE
1274	 48.61	0	1440387..1440746	+	119	74311891	yeaR	SSON_1364	-	hypothetical protein
1275	 45.90	-1	1440750..1440932	+	60	74311892	yoaG	SSON_1365	-	hypothetical protein
1276	 46.18	-1	1441080..1441328	+	82	74311893	yeaQ	SSON_1366	-	hypothetical protein
1277	 46.58	-1	1441595..1442749	-	384	74311894	yeaP	SSON_1367	-	hypothetical protein
1278	 51.76	0	1442803..1443057	+	84