IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1245	 46.53	-1	1410571..1410714	+	47	74311862	-	SSON_1335	-	hypothetical protein
1246	 43.40	-1	1410789..1411076	+	95	74311863	-	SSON_1336	-	hypothetical protein
1247	 47.14	-1	1411903..1412112	+	69	74311864	cspC	SSON_1337	-	cold shock-like protein CspC
1248	 51.11	0	1412278..1413087	+	269	74311865	rrmA	SSON_1338	-	23S rRNA methyltransferase A
1249	 51.53	0	1413084..1413704	-	206	74311866	-	SSON_1339	-	hypothetical protein
1250	 45.10	-1	1414081..1414539	-	152	74311867	-	SSON_1340	-	hypothetical protein
1251	 52.85	0	1414594..1415454	-	286	74311868	manZ	SSON_1341	-	mannose-specific PTS system protein IID
1252	 51.56	0	1415458..1416258	-	266	74311869	manY	SSON_1342	-	PTS enzyme IIC, mannose-specific
1253	 50.21	0	1416321..1417292	-	323	74311870	manX	SSON_1343	-	PTS enzyme IIAB, mannose-specific
1254	 53.77	0	1417755..1419305	+	516	74311871	yoaE	SSON_1344	-	putative transport protein
1255	 50.64	0	1419309..1420937	-	542	74311872	-	SSON_1345	-	hypothetical protein
1256	 53.77	0	1421038..1422402	-	454	74311873	sdaA	SSON_1346	-	L-serine deaminase
1257	 54.40	0	1422586..1423164	-	192	74311874	yeaB	SSON_1347	-	hypothetical protein
1258	 50.44	0	1423168..1424529	-	453	74311875	pabB	SSON_1348	-	p-aminobenzoate synthetase, component I
1259	 55.00	0	1424603..1424782	+	59	74311876	-	SSON_1349	-	hypothetical protein
1260	 44.33	-1	1424902..1425201	-	99