IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1236	 54.56	0	1397264..1397767	+	167	74311853	-	SSON_1325	-	IS1 ORF
1237	 52.42	0	1397985..1399430	-	481	74311854	yebU	SSON_1326	-	rRNA (cytosine-C(5)-)-methyltransferase RsmF
1238	 53.07	0	1399505..1402144	-	879	74311855	-	SSON_1327	-	hypothetical protein
1239	 50.55	0	1402107..1403390	-	427	74311856	-	SSON_1328	-	hypothetical protein
1240	 48.19	0	1403466..1404017	+	183	74311857	-	SSON_1329	-	hypothetical protein
1241	 53.08	0	1404114..1404812	+	232	74311858	proQ	SSON_1330	-	putative solute/DNA competence effector
1242	 50.71	0	1404832..1406880	+	682	74311859	prc	SSON_1331	-	carboxy-terminal protease
1243	 53.17	0	1407072..1407953	+	293	74311860	htpX	SSON_1332	-	heat shock protein HtpX
1244	 49.62	0	1409239..1410030	+	263	74311861	-	SSON_1334	-	putative regulator
1245	 46.53	-1	1410571..1410714	+	47	74311862	-	SSON_1335	-	hypothetical protein
1246	 43.40	-1	1410789..1411076	+	95	74311863	-	SSON_1336	-	hypothetical protein
1247	 47.14	-1	1411903..1412112	+	69	74311864	cspC	SSON_1337	-	cold shock-like protein CspC
1248	 51.11	0	1412278..1413087	+	269	74311865	rrmA	SSON_1338	-	23S rRNA methyltransferase A
1249	 51.53	0	1413084..1413704	-	206	74311866	-	SSON_1339	-	hypothetical protein
1250	 45.10	-1	1414081..1414539	-	152	74311867	-	SSON_1340	-	hypothetical protein
1251	 52.85	0	1414594..1415454	-	286