version 1.0
Shigella sonnei Ss046, complete genome - 1..4825265 4219 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1231 46.20 -1 1392904..1393206 - 100 74311848 - SSON_1319 - IS600 ORF1 1232 54.37 0 1394044..1394547 - 167 74311849 - SSON_1320 - IS1 ORF 1233 46.20 -1 1395159..1395461 + 100 74311850 - SSON_1322 - IS600 ORF1 1234 51.82 0 1395602..1396315 + 237 74311851 - SSON_1323 - IS600 ORF2 1235 46.01 -1 1396558..1396833 - 91 74311852 - SSON_1324 - hypothetical protein 1236 54.56 0 1397264..1397767 + 167 74311853 - SSON_1325 - IS1 ORF 1237 52.42 0 1397985..1399430 - 481 74311854 yebU SSON_1326 - rRNA (cytosine-C(5)-)-methyltransferase RsmF 1238 53.07 0 1399505..1402144 - 879 74311855 - SSON_1327 - hypothetical protein 1239 50.55 0 1402107..1403390 - 427 74311856 - SSON_1328 - hypothetical protein 1240 48.19 0 1403466..1404017 + 183 74311857 - SSON_1329 - hypothetical protein 1241 53.08 0 1404114..1404812 + 232 74311858 proQ SSON_1330 - putative solute/DNA competence effector 1242 50.71 0 1404832..1406880 + 682 74311859 prc SSON_1331 - carboxy-terminal protease 1243 53.17 0 1407072..1407953 + 293 74311860 htpX SSON_1332 - heat shock protein HtpX 1244 49.62 0 1409239..1410030 + 263 74311861 - SSON_1334 - putative regulator 1245 46.53 -1 1410571..1410714 + 47 74311862 - SSON_1335 - hypothetical protein 1246 43.40 -1 1410789..1411076 + 95 74311863 - SSON_1336 - hypothetical protein 1247 47.14 -1 1411903..1412112 + 69 74311864 cspC SSON_1337 - cold shock-like protein CspC 1248 51.11 0 1412278..1413087 + 269 74311865 rrmA SSON_1338 - 23S rRNA methyltransferase A 1249 51.53 0 1413084..1413704 - 206 74311866 - SSON_1339 - hypothetical protein 1250 45.10 -1 1414081..1414539 - 152 74311867 - SSON_1340 - hypothetical protein 1251 52.85 0 1414594..1415454 - 286 74311868 manZ SSON_1341 - mannose-specific PTS system protein IID 1252 51.56 0 1415458..1416258 - 266 74311869 manY SSON_1342 - PTS enzyme IIC, mannose-specific 1253 50.21 0 1416321..1417292 - 323 74311870 manX SSON_1343 - PTS enzyme IIAB, mannose-specific 1254 53.77 0 1417755..1419305 + 516 74311871 yoaE SSON_1344 - putative transport protein 1255 50.64 0 1419309..1420937 - 542 74311872 - SSON_1345 - hypothetical protein 1256 53.77 0 1421038..1422402 - 454 74311873 sdaA SSON_1346 - L-serine deaminase 1257 54.40 0 1422586..1423164 - 192 74311874 yeaB SSON_1347 - hypothetical protein 1258 50.44 0 1423168..1424529 - 453 74311875 pabB SSON_1348 - p-aminobenzoate synthetase, component I 1259 55.00 0 1424603..1424782 + 59 74311876 - SSON_1349 - hypothetical protein 1260 44.33 -1 1424902..1425201 - 99 74311877 - SSON_1350 - hypothetical protein 1261 54.37 0 1425274..1425777 - 167 74311878 - SSON_1351 - IS1 ORF 1262 50.38 0 1426399..1426791 - 130 74311879 - SSON_1352 - hypothetical protein 1263 55.26 0 1426875..1428785 + 636 74311880 yoaA SSON_1353 - putative enzyme 1264 55.46 0 1428843..1429538 + 231 74311881 yeaZ SSON_1354 - hypothetical protein 1265 50.52 0 1429578..1430159 + 193 74311882 - SSON_1355 - putative outer membrane protein 1266 51.19 0 1430364..1432049 + 561 74311883 fadD SSON_1356 - long-chain-fatty-acid--CoA ligase 1267 53.99 0 1432119..1433246 + 375 74311884 rnd SSON_1357 - ribonuclease D 1268 50.62 0 1433300..1434265 - 321 74311885 yeaX SSON_1358 - putative diogenase beta subunit 1269 51.73 0 1434321..1435445 - 374 74311886 yeaW SSON_1359 - hypothetical protein 1270 50.83 0 1435477..1436922 - 481 74311887 yeaV SSON_1360 - putative transporter 1271 53.68 0 1437338..1438423 - 361 74311888 yeaU SSON_1361 - putative tartrate dehydrogenase 1272 51.96 0 1438505..1439449 + 314 74311889 yeaT SSON_1362 - putative transcriptional regulator LYSR-type 1273 45.38 -1 1439576..1440214 + 212 74311890 yeaS SSON_1363 - leucine export protein LeuE 1274 48.61 0 1440387..1440746 + 119 74311891 yeaR SSON_1364 - hypothetical protein 1275 45.90 -1 1440750..1440932 + 60 74311892 yoaG SSON_1365 - hypothetical protein 1276 46.18 -1 1441080..1441328 + 82 74311893 yeaQ SSON_1366 - hypothetical protein 1277 46.58 -1 1441595..1442749 - 384 74311894 yeaP SSON_1367 - hypothetical protein 1278 51.76 0 1442803..1443057 + 84 74311895 yoaF SSON_1368 - hypothetical protein 1279 52.57 0 1443079..1443447 - 122 74311896 yeaO SSON_1369 - hypothetical protein 1280 52.45 0 1443481..1444662 - 393 74311897 yeaN SSON_1370 - putative amino acid/amine transport protein 1281 49.88 0 1444759..1445580 + 273 74311898 yeaM SSON_1371 - putative ARAC-type regulatory protein 1282 55.70 0 1445537..1445983 - 148 74311899 yeaL SSON_1372 - hypothetical protein 1283 46.41 -1 1446105..1446257 + 50 74311900 - SSON_1373 - hypothetical protein 1284 50.00 0 1446258..1446761 - 167 74311901 yeaK SSON_1374 - hypothetical protein 1285 45.83 -1 1446804..1448243 - 479 74311902 yeaJ SSON_1375 - hypothetical protein 1286 54.37 0 1448286..1448789 - 167 74311903 - SSON_1376 - IS1 ORF 1287 38.28 -2 1449251..1450726 - 491 74311904 yeaI SSON_1377 - hypothetical protein 1288 49.22 0 1450873..1452156 - 427 74311905 yeaH SSON_1378 - hypothetical protein 1289 50.03 0 1452269..1454203 - 644 74311906 yeaG SSON_1379 - hypothetical protein 1290 52.48 0 1454639..1455385 + 248 74311907 yeaF SSON_1380 - hypothetical protein 1291 50.41 0 1455475..1456329 + 284 74311908 - SSON_1381 - putative an aldehyde reductase 1292 49.67 0 1456380..1457285 - 301 74311909 yeaD SSON_1382 - hypothetical protein 1293 53.90 0 1457332..1458678 - 448 74311910 - SSON_1383 - IS4 orf 1294 50.20 0 1458786..1459781 - 331 74311911 gapA SSON_1384 - glyceraldehyde-3-phosphate dehydrogenase A 1295 48.07 0 1460123..1460536 + 137 74311912 yeaA SSON_1385 - methionine sulfoxide reductase B 1296 44.65 -1 1460533..1460850 + 105 74311913 - SSON_1386 - hypothetical protein 1297 52.96 0 1461011..1461652 - 213 161986534 ydjB SSON_1387 - nicotinamidase/pyrazinamidase 1298 51.13 0 1461663..1462679 - 338 74311915 ansA SSON_1388 - cytoplasmic asparaginase I 1299 52.13 0 1462846..1464702 - 618 74311916 sppA SSON_1389 - protease 4 1300 55.80 0 1464863..1465414 + 183 74311917 ydjA SSON_1390 - hypothetical protein 1301 55.17 0 1465531..1466574 + 347 74311918 selD SSON_1391 - selenophosphate synthetase 1302 55.05 0 1466579..1468540 + 653 74311919 topB SSON_1392 - DNA topoisomerase III 1303 54.56 0 1468588..1469091 - 167 74311920 - SSON_1393 - IS1 ORF 1304 53.27 0 1470601..1471944 - 447 74311921 gdhA SSON_1395 - glutamate dehydrogenase 1305 50.92 0 1472180..1472452 + 90 74311922 - SSON_1396 - hypothetical protein 1306 53.92 0 1472418..1472825 - 135 74311923 - SSON_1397 - pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase 1307 54.37 0 1473432..1473935 + 167 74311924 - SSON_1399 - IS1 ORF 1308 53.67 0 1474317..1475639 - 440 74311925 - SSON_1400 - putative thiosulfate sulfur transferase 1309 52.29 0 1475691..1476344 - 217 74311926 - SSON_1401 - putative ATP-binding component of a transport system 1310 56.04 +1 1477853..1479019 - 388 74311927 - SSON_1403 - hypothetical protein 1311 56.28 +1 1479029..1479577 - 182 74311928 ynjA SSON_1404 - hypothetical protein 1312 51.41 0 1479577..1480284 - 235 74311929 ydjZ SSON_1405 - hypothetical protein 1313 49.64 0 1480299..1481138 - 279 74311930 ydjY SSON_1406 - hypothetical protein 1314 47.69 0 1480981..1481739 - 252 74311931 ydjX SSON_1407 - hypothetical protein 1315 53.16 0 1481858..1482664 - 268 74311932 xthA SSON_1408 - exonuclease III 1316 54.87 0 1483110..1484330 + 406 74311933 cstC SSON_1409 - bifunctional succinylornithine transaminase/acetylornithine transaminase 1317 56.23 +1 1484327..1485361 + 344 74311934 - SSON_1410 - arginine succinyltransferase 1318 55.28 0 1486833..1488176 + 447 74311935 - SSON_1412 - succinylarginine dihydrolase 1319 53.66 0 1488169..1489137 + 322 74311936 ydjS SSON_1413 - succinylglutamate desuccinylase 1320 51.95 0 1489467..1489928 + 153 74311937 spy SSON_1414 - periplasmic protein 1321 54.37 0 1490173..1490676 + 167 74311938 - SSON_1415 - IS1 ORF 1322 51.33 0 1490869..1491507 + 212 74311939 - SSON_1416 - hypothetical protein 1323 51.35 0 1491467..1492354 - 295 74311940 - SSON_1417 - nucleotide excision repair endonuclease 1324 49.28 0 1492584..1493411 - 275 74311941 nadE SSON_1418 - NAD synthetase 1325 48.97 0 1493613..1493951 + 112 74311942 osmE SSON_1419 - DNA-binding transcriptional activator OsmE 1326 43.93 -1 1494250..1494570 + 106 74311943 celA SSON_1420 - N,N'-diacetylchitobiose-specific PTS system transporter subunit IIB 1327 49.45 0 1494655..1496013 + 452 74311944 celB SSON_1421 - N,N'-diacetylchitobiose-specific PTS system transporter subunit IIC 1328 49.29 0 1496064..1496414 + 116 74311945 celC SSON_1422 - N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA 1329 41.64 -2 1496422..1497264 + 280 74311946 celD SSON_1423 - DNA-binding transcriptional regulator ChbR 1330 46.78 -1 1497369..1498721 + 450 74311947 celF SSON_1424 - cryptic phospho-beta-glucosidase 51.65 MEAN 4.20 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0