IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1229	 49.01	0	1390133..1391848	-	571	74311846	ipaH_3	SSON_1317	-	invasion plasmid antigen
1230	 51.68	0	1392050..1392763	-	237	74311847	-	SSON_1318	-	IS600 ORF2
1231	 46.20	-1	1392904..1393206	-	100	74311848	-	SSON_1319	-	IS600 ORF1
1232	 54.37	0	1394044..1394547	-	167	74311849	-	SSON_1320	-	IS1 ORF
1233	 46.20	-1	1395159..1395461	+	100	74311850	-	SSON_1322	-	IS600 ORF1
1234	 51.82	0	1395602..1396315	+	237	74311851	-	SSON_1323	-	IS600 ORF2
1235	 46.01	-1	1396558..1396833	-	91	74311852	-	SSON_1324	-	hypothetical protein
1236	 54.56	0	1397264..1397767	+	167	74311853	-	SSON_1325	-	IS1 ORF
1237	 52.42	0	1397985..1399430	-	481	74311854	yebU	SSON_1326	-	rRNA (cytosine-C(5)-)-methyltransferase RsmF
1238	 53.07	0	1399505..1402144	-	879	74311855	-	SSON_1327	-	hypothetical protein
1239	 50.55	0	1402107..1403390	-	427	74311856	-	SSON_1328	-	hypothetical protein
1240	 48.19	0	1403466..1404017	+	183	74311857	-	SSON_1329	-	hypothetical protein
1241	 53.08	0	1404114..1404812	+	232	74311858	proQ	SSON_1330	-	putative solute/DNA competence effector
1242	 50.71	0	1404832..1406880	+	682	74311859	prc	SSON_1331	-	carboxy-terminal protease
1243	 53.17	0	1407072..1407953	+	293	74311860	htpX	SSON_1332	-	heat shock protein HtpX
1244	 49.62	0	1409239..1410030	+	263	74