IslandPathversion 1.0

IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1224	 54.94	0	1386695..1387555	-	286	161986535	-	SSON_1312	-	insertion element IS2 transposase InsD
1225	 53.01	0	1387513..1387878	-	121	74311842	-	SSON_1313	-	insertion sequence 2 OrfA protein
1226	 56.93	+1	1387967..1388233	-	88	74311843	-	SSON_1314	-	IS1 ORF
1227	 45.87	-1	1388861..1389163	+	100	74311844	-	SSON_1315	-	IS600 ORF1
1228	 52.10	0	1389304..1390017	+	237	74311845	-	SSON_1316	-	IS600 ORF2
1229	 49.01	0	1390133..1391848	-	571	74311846	ipaH_3	SSON_1317	-	invasion plasmid antigen
1230	 51.68	0	1392050..1392763	-	237	74311847	-	SSON_1318	-	IS600 ORF2
1231	 46.20	-1	1392904..1393206	-	100	74311848	-	SSON_1319	-	IS600 ORF1
1232	 54.37	0	1394044..1394547	-	167	74311849	-	SSON_1320	-	IS1 ORF
1233	 46.20	-1	1395159..1395461	+	100	74311850	-	SSON_1322	-	IS600 ORF1
1234	 51.82	0	1395602..1396315	+	237	74311851	-	SSON_1323	-	IS600 ORF2
1235	 46.01	-1	1396558..1396833	-	91	74311852	-	SSON_1324	-	hypothetical protein
1236	 54.56	0	1397264..1397767	+	167	74311853	-	SSON_1325	-	IS1 ORF
1237	 52.42	0	1397985..1399430	-	481	74311854	yebU	SSON_1326	-	rRNA (cytosine-C(5)-)-methyltransferase RsmF
1238	 53.07	0	1399505..1402144	-	879	74311855	-	SSON_1327	-	hypothetical protein
1239	 50.55	0	1402107..1403390	-	427	74311856	-	SSON_1328	-	hypotheti