IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1219	 49.87	0	1383329..1383703	+	124	74311836	-	SSON_1307	-	hypothetical protein
1220	 53.04	0	1383707..1384579	+	290	74311837	-	SSON_1308	-	putative resistance protein
1221	 45.91	-1	1384592..1384933	+	113	74311838	-	SSON_1309	-	hypothetical protein
1222	 42.34	-2	1385326..1386402	-	358	74311839	-	SSON_1310	-	putative phage integrase protein
1223	 51.22	0	1386439..1386684	-	81	74311840	-	SSON_1311	-	IS1 ORF
1224	 54.94	0	1386695..1387555	-	286	161986535	-	SSON_1312	-	insertion element IS2 transposase InsD
1225	 53.01	0	1387513..1387878	-	121	74311842	-	SSON_1313	-	insertion sequence 2 OrfA protein
1226	 56.93	+1	1387967..1388233	-	88	74311843	-	SSON_1314	-	IS1 ORF
1227	 45.87	-1	1388861..1389163	+	100	74311844	-	SSON_1315	-	IS600 ORF1
1228	 52.10	0	1389304..1390017	+	237	74311845	-	SSON_1316	-	IS600 ORF2
1229	 49.01	0	1390133..1391848	-	571	74311846	ipaH_3	SSON_1317	-	invasion plasmid antigen
1230	 51.68	0	1392050..1392763	-	237	74311847	-	SSON_1318	-	IS600 ORF2
1231	 46.20	-1	1392904..1393206	-	100	74311848	-	SSON_1319	-	IS600 ORF1
1232	 54.37	0	1394044..1394547	-	167	74311849	-	SSON_1320	-	IS1 ORF
1233	 46.20	-1	1395159..1395461	+	100	74311850	-	SSON_1322	-	IS600 ORF1
1234	 51.82	0	1395602..1396315	+	237	74311851	-	SSON_1323	-	IS600