IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1209	 53.75	0	1373695..1375506	+	603	74311826	edd	SSON_1297	-	phosphogluconate dehydratase
1210	 55.92	+1	1375543..1376184	+	213	74311827	eda	SSON_1298	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
1211	 53.77	0	1376240..1377418	-	392	74311828	purT	SSON_1299	-	phosphoribosylglycinamide formyltransferase 2
1212	 49.48	0	1377552..1377842	+	96	74311829	yebG	SSON_1300	-	DNA damage-inducible protein YebG
1213	 49.05	0	1377897..1378265	+	122	74311830	yebF	SSON_1301	-	hypothetical protein
1214	 52.58	0	1378592..1379251	+	219	74311831	yebE	SSON_1302	-	hypothetical protein
1215	 49.64	0	1379459..1381519	+	686	74311832	ptrB	SSON_1303	-	protease 2
1216	 52.19	0	1381516..1382178	-	220	74311833	-	SSON_1304	-	exodeoxyribonuclease X
1217	 51.90	0	1382202..1382858	-	218	74311834	-	SSON_1305	-	hypothetical protein
1218	 48.48	0	1382960..1383190	-	76	74311835	holE	SSON_1306	-	DNA polymerase III subunit theta
1219	 49.87	0	1383329..1383703	+	124	74311836	-	SSON_1307	-	hypothetical protein
1220	 53.04	0	1383707..1384579	+	290	74311837	-	SSON_1308	-	putative resistance protein
1221	 45.91	-1	1384592..1384933	+	113	74311838	-	SSON_1309	-	hypothetical protein
1222	 42.34	-2	1385326..1386402	-	358	74311839	-	SSON_1310	-	putative phage integrase protein
1223	 51.22	0	1386439..1386684	-	81	74311840	-	SSON_1311	-	IS1 ORF
1224	 54.94	0	1386695..1387555	-	286